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  5. Sobic.009G173700.1

Sobic.009G173700.1


Description : alpha-class expansin


Gene families : OG_42_0000014 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000014_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor: Sobic.009G173700.1
Cluster HCAA Clusters: Cluster_123

Target Alias Description ECC score Gene Family Method Actions
419575 No alias expansin A16 0.03 Orthogroups_2024-Update
Bradi3g09950 No alias expansin 11 0.03 Orthogroups_2024-Update
Brara.E00178.1 No alias alpha-class expansin 0.04 Orthogroups_2024-Update
Brara.E00745.1 No alias alpha-class expansin 0.03 Orthogroups_2024-Update
Brara.F03107.1 No alias alpha-class expansin 0.03 Orthogroups_2024-Update
GRMZM2G450546 No alias expansin 11 0.03 Orthogroups_2024-Update
LOC_Os01g60770 No alias expansin precursor, putative, expressed 0.03 Orthogroups_2024-Update
MA_172610g0010 No alias (at2g40610 : 331.0) member of Alpha-Expansin Gene... 0.02 Orthogroups_2024-Update
MA_30127g0010 No alias (at2g40610 : 411.0) member of Alpha-Expansin Gene... 0.03 Orthogroups_2024-Update
MA_316222g0010 No alias (at2g40610 : 383.0) member of Alpha-Expansin Gene... 0.03 Orthogroups_2024-Update
MA_4979g0010 No alias (q40636|expa2_orysa : 406.0) Expansin-A2 precursor... 0.03 Orthogroups_2024-Update
PSME_00055878-RA No alias (at5g02260 : 159.0) member of Alpha-Expansin Gene... 0.02 Orthogroups_2024-Update
Potri.004G123200 No alias expansin A1 0.05 Orthogroups_2024-Update
Potri.006G086100 No alias Barwin-like endoglucanases superfamily protein 0.04 Orthogroups_2024-Update
Potri.006G108000 No alias expansin A8 0.02 Orthogroups_2024-Update
Potri.008G088300 No alias expansin A1 0.03 Orthogroups_2024-Update
Potri.009G031800 No alias expansin A4 0.03 Orthogroups_2024-Update
Potri.013G060800 No alias expansin A15 0.02 Orthogroups_2024-Update
Potri.016G135200 No alias expansin A8 0.02 Orthogroups_2024-Update
Pp1s11_29V6 No alias expansin 2 0.02 Orthogroups_2024-Update
Pp1s246_53V6 No alias alpha-expansin 1 0.02 Orthogroups_2024-Update
Pp1s266_66V6 No alias alpha expansin xpa5 0.04 Orthogroups_2024-Update
Pp1s325_11V6 No alias expa6 gene for putative alpha expansin protein family EXPA6 0.02 Orthogroups_2024-Update
Seita.6G251700.1 No alias alpha-class expansin 0.02 Orthogroups_2024-Update
Sobic.010G006200.1 No alias alpha-class expansin 0.02 Orthogroups_2024-Update
Solyc06g051800 No alias expansin 1 0.03 Orthogroups_2024-Update
Sopen03g005700 No alias Pollen allergen 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000375 RNA splicing, via transesterification reactions IEP Predicted GO
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP Predicted GO
BP GO:0000398 mRNA splicing, via spliceosome IEP Predicted GO
CC GO:0005681 spliceosomal complex IEP Predicted GO
BP GO:0008380 RNA splicing IEP Predicted GO
MF GO:0051087 chaperone binding IEP Predicted GO
InterPro domains Description Start Stop
IPR009009 RlpA-like_DPBB 61 145
IPR007117 Expansin_CBD 157 234
No external refs found!