1. Home
  2. Species
  3. Sorghum bicolor
  4. Sequence
  5. Sobic.009G173800.1

Sobic.009G173800.1


Description : Unknown function


Gene families : OG_42_0000003 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor: Sobic.009G173800.1
Cluster HCAA Clusters: Cluster_65

Target Alias Description ECC score Gene Family Method Actions
At2g17450 No alias Probable E3 ubiquitin-protein ligase ATL44... 0.02 Orthogroups_2024-Update
GRMZM2G031280 No alias RING/U-box superfamily protein 0.03 Orthogroups_2024-Update
Glyma.05G175400 No alias RING/U-box superfamily protein 0.02 Orthogroups_2024-Update
HORVU5Hr1G079910.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Kfl00212_0070 kfl00212_0070_v1.1 no hits & (original description: no original description) 0.01 Orthogroups_2024-Update
LOC_Os02g15000 No alias zinc finger, C3HC4 type domain containing protein, expressed 0.02 Orthogroups_2024-Update
LOC_Os09g38110 No alias RING-H2 finger protein, putative, expressed 0.04 Orthogroups_2024-Update
LOC_Os11g39640 No alias zinc finger, C3HC4 type domain containing protein, expressed 0.03 Orthogroups_2024-Update
MA_107765g0010 No alias (at1g72200 : 140.0) RING/U-box superfamily protein;... 0.02 Orthogroups_2024-Update
PSME_00003015-RA No alias (at3g05200 : 122.0) Encodes a putative RING-H2 zinc... 0.02 Orthogroups_2024-Update
Potri.003G093100 No alias RING/U-box superfamily protein 0.03 Orthogroups_2024-Update
Pp1s20_276V6 No alias No description available 0.02 Orthogroups_2024-Update
Seita.4G088200.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.02 Orthogroups_2024-Update
Sobic.004G114200.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.01 Orthogroups_2024-Update
Solyc01g091770 No alias RING/U-box superfamily protein (AHRD V3.3 *** A0A061DVK5_THECC) 0.03 Orthogroups_2024-Update
Solyc06g051250 No alias LOW QUALITY:RING/U-box superfamily protein, putative... 0.03 Orthogroups_2024-Update
evm.model.tig00001128.32 No alias no hits & (original description: no original description) 0.01 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Predicted GO
MF GO:0000295 adenine nucleotide transmembrane transporter activity IEP Predicted GO
BP GO:0001522 pseudouridine synthesis IEP Predicted GO
MF GO:0003682 chromatin binding IEP Predicted GO
MF GO:0003723 RNA binding IEP Predicted GO
MF GO:0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity IEP Predicted GO
MF GO:0005346 purine ribonucleotide transmembrane transporter activity IEP Predicted GO
MF GO:0005347 ATP transmembrane transporter activity IEP Predicted GO
MF GO:0005471 ATP:ADP antiporter activity IEP Predicted GO
MF GO:0005488 binding IEP Predicted GO
MF GO:0005524 ATP binding IEP Predicted GO
BP GO:0006862 nucleotide transport IEP Predicted GO
MF GO:0008144 drug binding IEP Predicted GO
MF GO:0008509 anion transmembrane transporter activity IEP Predicted GO
MF GO:0008514 organic anion transmembrane transporter activity IEP Predicted GO
BP GO:0009435 NAD biosynthetic process IEP Predicted GO
MF GO:0009982 pseudouridine synthase activity IEP Predicted GO
MF GO:0015215 nucleotide transmembrane transporter activity IEP Predicted GO
MF GO:0015216 purine nucleotide transmembrane transporter activity IEP Predicted GO
MF GO:0015217 ADP transmembrane transporter activity IEP Predicted GO
MF GO:0015238 drug transmembrane transporter activity IEP Predicted GO
MF GO:0015301 anion:anion antiporter activity IEP Predicted GO
MF GO:0015605 organophosphate ester transmembrane transporter activity IEP Predicted GO
BP GO:0015748 organophosphate ester transport IEP Predicted GO
BP GO:0015931 nucleobase-containing compound transport IEP Predicted GO
MF GO:0015932 nucleobase-containing compound transmembrane transporter activity IEP Predicted GO
CC GO:0016459 myosin complex IEP Predicted GO
MF GO:0016763 transferase activity, transferring pentosyl groups IEP Predicted GO
MF GO:0016853 isomerase activity IEP Predicted GO
MF GO:0017076 purine nucleotide binding IEP Predicted GO
BP GO:0019674 NAD metabolic process IEP Predicted GO
MF GO:0030554 adenyl nucleotide binding IEP Predicted GO
MF GO:0032553 ribonucleotide binding IEP Predicted GO
MF GO:0032555 purine ribonucleotide binding IEP Predicted GO
MF GO:0032559 adenyl ribonucleotide binding IEP Predicted GO
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Predicted GO
MF GO:0036094 small molecule binding IEP Predicted GO
MF GO:0043167 ion binding IEP Predicted GO
MF GO:0043168 anion binding IEP Predicted GO
MF GO:0043531 ADP binding IEP Predicted GO
MF GO:0097159 organic cyclic compound binding IEP Predicted GO
MF GO:0097367 carbohydrate derivative binding IEP Predicted GO
MF GO:0099516 ion antiporter activity IEP Predicted GO
MF GO:1901265 nucleoside phosphate binding IEP Predicted GO
MF GO:1901363 heterocyclic compound binding IEP Predicted GO
MF GO:1901505 carbohydrate derivative transmembrane transporter activity IEP Predicted GO
InterPro domains Description Start Stop
IPR001841 Znf_RING 130 173
No external refs found!