1. Home
  2. Species
  3. Sorghum bicolor
  4. Sequence
  5. Sobic.009G178000.1

Sobic.009G178000.1


Description : GARP subgroup PHL transcription factor


Gene families : OG_42_0000021 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000021_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor: Sobic.009G178000.1
Cluster HCAA Clusters: Cluster_115

Target Alias Description ECC score Gene Family Method Actions
Bradi1g63530 No alias Homeodomain-like superfamily protein 0.02 Orthogroups_2024-Update
Brara.I00432.1 No alias GARP subgroup PHL transcription factor & transcription... 0.04 Orthogroups_2024-Update
Brara.I01162.1 No alias GARP subgroup PHL transcription factor & transcription... 0.02 Orthogroups_2024-Update
Brara.J01739.1 No alias GARP subgroup PHL transcription factor 0.02 Orthogroups_2024-Update
GRMZM2G125704 No alias Homeodomain-like superfamily protein 0.03 Orthogroups_2024-Update
Glyma.03G250000 No alias Homeodomain-like superfamily protein 0.03 Orthogroups_2024-Update
HORVU2Hr1G102040.15 No alias GARP subgroup PHL transcription factor 0.03 Orthogroups_2024-Update
HORVU4Hr1G051080.3 No alias GARP subgroup PHL transcription factor & transcription... 0.04 Orthogroups_2024-Update
LOC_Os07g25710 No alias myb-like DNA-binding domain containing protein, expressed 0.02 Orthogroups_2024-Update
Mp3g04970.1 No alias G2-like GARP transcription factor 0.02 Orthogroups_2024-Update
Mp4g01560.1 No alias G2-like GARP transcription factor 0.02 Orthogroups_2024-Update
Pp1s226_24V6 No alias myb-cc type transfactor 0.03 Orthogroups_2024-Update
Pp1s25_131V6 No alias F18A5.30; myb family transcription factor [Arabidopsis thaliana] 0.02 Orthogroups_2024-Update
Pp1s33_139V6 No alias myb family transcription factor 0.02 Orthogroups_2024-Update
Seita.9G419000.1 No alias GARP subgroup PHL transcription factor 0.03 Orthogroups_2024-Update
Sobic.007G137300.2 No alias GARP subgroup PHL transcription factor 0.03 Orthogroups_2024-Update
Solyc06g066340 No alias Myb family transcription factor family protein (AHRD... 0.03 Orthogroups_2024-Update
Solyc08g076400 No alias Myb family transcription factor family protein (AHRD... 0.02 Orthogroups_2024-Update
Solyc09g005030 No alias Homeodomain-like superfamily protein (AHRD V3.3 *-* AT2G40260.1) 0.04 Orthogroups_2024-Update
Solyc12g006280 No alias Homeodomain-like superfamily protein (AHRD V3.3 *-* AT2G40260.1) 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000272 polysaccharide catabolic process IEP Predicted GO
MF GO:0001671 ATPase activator activity IEP Predicted GO
MF GO:0004470 malic enzyme activity IEP Predicted GO
MF GO:0004471 malate dehydrogenase (decarboxylating) (NAD+) activity IEP Predicted GO
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP Predicted GO
MF GO:0005488 binding IEP Predicted GO
MF GO:0005516 calmodulin binding IEP Predicted GO
MF GO:0008047 enzyme activator activity IEP Predicted GO
MF GO:0016160 amylase activity IEP Predicted GO
MF GO:0016161 beta-amylase activity IEP Predicted GO
BP GO:0016226 iron-sulfur cluster assembly IEP Predicted GO
MF GO:0016615 malate dehydrogenase activity IEP Predicted GO
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP Predicted GO
MF GO:0019842 vitamin binding IEP Predicted GO
MF GO:0030170 pyridoxal phosphate binding IEP Predicted GO
MF GO:0031072 heat shock protein binding IEP Predicted GO
BP GO:0031163 metallo-sulfur cluster assembly IEP Predicted GO
MF GO:0048037 cofactor binding IEP Predicted GO
MF GO:0050662 coenzyme binding IEP Predicted GO
MF GO:0051082 unfolded protein binding IEP Predicted GO
MF GO:0051087 chaperone binding IEP Predicted GO
MF GO:0051287 NAD binding IEP Predicted GO
MF GO:0060590 ATPase regulator activity IEP Predicted GO
MF GO:0070279 vitamin B6 binding IEP Predicted GO
MF GO:0070403 NAD+ binding IEP Predicted GO
InterPro domains Description Start Stop
IPR001005 SANT/Myb 46 97
IPR025756 Myb_CC_LHEQLE 145 192
No external refs found!