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  5. Sobic.009G191300.1

Sobic.009G191300.1


Description : component *(PsbW) of PS-II complex


Gene families : OG_42_0003970 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0003970_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor: Sobic.009G191300.1
Cluster HCAA Clusters: Cluster_14

Target Alias Description ECC score Gene Family Method Actions
A4A49_05181 No alias photosystem ii reaction center w protein, chloroplastic 0.03 Orthogroups_2024-Update
At2g30570 No alias PSBW [Source:UniProtKB/TrEMBL;Acc:A0A178VQ32] 0.03 Orthogroups_2024-Update
Bradi2g20380 No alias photosystem II reaction center W 0.04 Orthogroups_2024-Update
Bradi2g51480 No alias photosystem II reaction center W 0.03 Orthogroups_2024-Update
Brara.D01828.1 No alias component *(PsbW) of PS-II complex 0.06 Orthogroups_2024-Update
Glyma.02G141700 No alias photosystem II reaction center W 0.07 Orthogroups_2024-Update
Glyma.03G159100 No alias photosystem II reaction center W 0.03 Orthogroups_2024-Update
Glyma.10G032200 No alias photosystem II reaction center W 0.03 Orthogroups_2024-Update
Glyma.19G161400 No alias photosystem II reaction center W 0.03 Orthogroups_2024-Update
HORVU1Hr1G078140.4 No alias component *(PsbW) of PS-II complex 0.04 Orthogroups_2024-Update
Kfl00638_0030 kfl00638_0030_v1.1 no hits & (original description: no original description) 0.03 Orthogroups_2024-Update
LOC_Os01g56680 No alias photosystem II reaction center W protein, chloroplast... 0.02 Orthogroups_2024-Update
Mp5g14190.1 No alias component PsbW of PS-II complex 0.04 Orthogroups_2024-Update
Pp1s185_110V6 No alias photosystem ii reaction center w chloroplast 0.08 Orthogroups_2024-Update
Pp1s185_111V6 No alias photosystem ii reaction center w chloroplast 0.04 Orthogroups_2024-Update
Seita.3G184900.1 No alias component *(PsbW) of PS-II complex 0.1 Orthogroups_2024-Update
Seita.5G336700.1 No alias component *(PsbW) of PS-II complex 0.05 Orthogroups_2024-Update
Solyc06g084050 No alias LOW QUALITY:isochorismate synthase 2 (AHRD V3.3 --* AT1G18870.2) 0.04 Orthogroups_2024-Update
Solyc09g065910 No alias photosystem II reaction center W (AHRD V3.3 *** AT2G30570.1) 0.04 Orthogroups_2024-Update
Sopen06g035440 No alias Photosystem II reaction centre W protein (PsbW) 0.04 Orthogroups_2024-Update
Sopen09g027700 No alias Photosystem II reaction centre W protein (PsbW) 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
CC GO:0009507 chloroplast IEA 16Dec
CC GO:0009523 photosystem II IEA 16Dec
BP GO:0015979 photosynthesis IEA 16Dec
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Type GO Term Name Evidence Source
BP GO:0006576 cellular biogenic amine metabolic process IEP Predicted GO
MF GO:0008883 glutamyl-tRNA reductase activity IEP Predicted GO
BP GO:0009309 amine biosynthetic process IEP Predicted GO
CC GO:0009522 photosystem I IEP Predicted GO
CC GO:0009538 photosystem I reaction center IEP Predicted GO
MF GO:0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor IEP Predicted GO
MF GO:0016780 phosphotransferase activity, for other substituted phosphate groups IEP Predicted GO
MF GO:0016851 magnesium chelatase activity IEP Predicted GO
BP GO:0030163 protein catabolic process IEP Predicted GO
MF GO:0030410 nicotianamine synthase activity IEP Predicted GO
BP GO:0030417 nicotianamine metabolic process IEP Predicted GO
BP GO:0030418 nicotianamine biosynthetic process IEP Predicted GO
BP GO:0042401 cellular biogenic amine biosynthetic process IEP Predicted GO
BP GO:0044106 cellular amine metabolic process IEP Predicted GO
MF GO:0051002 ligase activity, forming nitrogen-metal bonds IEP Predicted GO
MF GO:0051003 ligase activity, forming nitrogen-metal bonds, forming coordination complexes IEP Predicted GO
BP GO:0072350 tricarboxylic acid metabolic process IEP Predicted GO
BP GO:0072351 tricarboxylic acid biosynthetic process IEP Predicted GO
InterPro domains Description Start Stop
IPR009806 PSII_PsbW_class2 4 144
No external refs found!