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  5. Sobic.009G203200.1

Sobic.009G203200.1


Description : pectin methylesterase


Gene families : OG_42_0000087 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000087_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor: Sobic.009G203200.1
Cluster HCAA Clusters: Cluster_70

Target Alias Description ECC score Gene Family Method Actions
76693 No alias Pectin lyase-like superfamily protein 0.03 Orthogroups_2024-Update
PSME_00006227-RA No alias (at5g55590 : 348.0) Encodes a protein with pectin... 0.03 Orthogroups_2024-Update
Pp1s35_88V6 No alias pectin methylesterase 0.02 Orthogroups_2024-Update
Sopen02g029180 No alias Pectinesterase 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0030599 pectinesterase activity IEA 16Dec
BP GO:0042545 cell wall modification IEA 16Dec
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Type GO Term Name Evidence Source
MF GO:0003690 double-stranded DNA binding IEP Predicted GO
BP GO:0006298 mismatch repair IEP Predicted GO
BP GO:0007034 vacuolar transport IEP Predicted GO
MF GO:0030983 mismatched DNA binding IEP Predicted GO
InterPro domains Description Start Stop
IPR000070 Pectinesterase_cat 115 400
No external refs found!