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  5. Sobic.009G209100.2

Sobic.009G209100.2


Description : regulatory protein *(RGG) of mRNA quality control


Gene families : OG_42_0001353 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001353_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor: Sobic.009G209100.2
Cluster HCAA Clusters: Cluster_43

Target Alias Description ECC score Gene Family Method Actions
Brara.B02951.1 No alias regulatory protein *(RGG) of mRNA quality control 0.03 Orthogroups_2024-Update
Brara.C04556.1 No alias regulatory protein *(RGG) of mRNA quality control 0.03 Orthogroups_2024-Update
Glyma.03G110300 No alias Hyaluronan / mRNA binding family 0.03 Orthogroups_2024-Update
Glyma.07G114600 No alias Hyaluronan / mRNA binding family 0.03 Orthogroups_2024-Update
PSME_00012836-RA No alias (at4g16830 : 146.0) Hyaluronan / mRNA binding family;... 0.03 Orthogroups_2024-Update
Seita.3G167700.1 No alias regulatory protein *(RGG) of mRNA quality control 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0001882 nucleoside binding IEP Predicted GO
MF GO:0001883 purine nucleoside binding IEP Predicted GO
MF GO:0002161 aminoacyl-tRNA editing activity IEP Predicted GO
MF GO:0003723 RNA binding IEP Predicted GO
MF GO:0003735 structural constituent of ribosome IEP Predicted GO
MF GO:0004190 aspartic-type endopeptidase activity IEP Predicted GO
MF GO:0004812 aminoacyl-tRNA ligase activity IEP Predicted GO
MF GO:0005198 structural molecule activity IEP Predicted GO
MF GO:0005525 GTP binding IEP Predicted GO
CC GO:0005741 mitochondrial outer membrane IEP Predicted GO
BP GO:0006399 tRNA metabolic process IEP Predicted GO
BP GO:0006418 tRNA aminoacylation for protein translation IEP Predicted GO
BP GO:0006520 cellular amino acid metabolic process IEP Predicted GO
MF GO:0008233 peptidase activity IEP Predicted GO
MF GO:0008237 metallopeptidase activity IEP Predicted GO
MF GO:0016874 ligase activity IEP Predicted GO
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP Predicted GO
MF GO:0019001 guanyl nucleotide binding IEP Predicted GO
CC GO:0019867 outer membrane IEP Predicted GO
CC GO:0031090 organelle membrane IEP Predicted GO
CC GO:0031966 mitochondrial membrane IEP Predicted GO
CC GO:0031968 organelle outer membrane IEP Predicted GO
MF GO:0032549 ribonucleoside binding IEP Predicted GO
MF GO:0032550 purine ribonucleoside binding IEP Predicted GO
MF GO:0032561 guanyl ribonucleotide binding IEP Predicted GO
BP GO:0034660 ncRNA metabolic process IEP Predicted GO
BP GO:0040008 regulation of growth IEP Predicted GO
BP GO:0043038 amino acid activation IEP Predicted GO
BP GO:0043039 tRNA aminoacylation IEP Predicted GO
CC GO:0044444 cytoplasmic part IEP Predicted GO
BP GO:0045927 positive regulation of growth IEP Predicted GO
BP GO:0048518 positive regulation of biological process IEP Predicted GO
MF GO:0070001 aspartic-type peptidase activity IEP Predicted GO
MF GO:0070011 peptidase activity, acting on L-amino acid peptides IEP Predicted GO
CC GO:0098588 bounding membrane of organelle IEP Predicted GO
CC GO:0098805 whole membrane IEP Predicted GO
MF GO:0140098 catalytic activity, acting on RNA IEP Predicted GO
MF GO:0140101 catalytic activity, acting on a tRNA IEP Predicted GO
InterPro domains Description Start Stop
IPR019084 Stm1-like_N 1 72
IPR006861 HABP4_PAIRBP1-bd 154 266
No external refs found!