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  5. Sobic.009G212300.1

Sobic.009G212300.1


Description : component *(eIF3f) of eIF3 mRNA-to-PIC binding complex


Gene families : OG_42_0003671 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0003671_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor: Sobic.009G212300.1
Cluster HCAA Clusters: Cluster_75

Target Alias Description ECC score Gene Family Method Actions
At2g39990 No alias Eukaryotic translation initiation factor 3 subunit F... 0.03 Orthogroups_2024-Update
Bradi2g39810 No alias eukaryotic translation initiation factor 2 0.07 Orthogroups_2024-Update
Brara.C02044.1 No alias component *(eIF3f) of eIF3 mRNA-to-PIC binding complex 0.05 Orthogroups_2024-Update
Brara.E00581.1 No alias component *(eIF3f) of eIF3 mRNA-to-PIC binding complex 0.03 Orthogroups_2024-Update
Cre16.g654500 No alias eukaryotic translation initiation factor 2 0.03 Orthogroups_2024-Update
Glyma.11G227900 No alias eukaryotic translation initiation factor 2 0.03 Orthogroups_2024-Update
Kfl00006_0150 kfl00006_0150_v1.1 (at2g39990 : 326.0) translation initiation factor eIF2... 0.02 Orthogroups_2024-Update
LOC_Os05g01450 No alias eukaryotic translation initiation factor 3 subunit F,... 0.04 Orthogroups_2024-Update
Potri.010G192000 No alias eukaryotic translation initiation factor 2 0.04 Orthogroups_2024-Update
Seita.3G071100.1 No alias component *(eIF3f) of eIF3 mRNA-to-PIC binding complex 0.17 Orthogroups_2024-Update
Solyc11g013440 No alias Eukaryotic translation initiation factor 3 subunit F... 0.04 Orthogroups_2024-Update
Sopen05g031210 No alias JAB1/Mov34/MPN/PAD-1 ubiquitin protease 0.04 Orthogroups_2024-Update
Sopen11g008430 No alias Maintenance of mitochondrial structure and function 0.04 Orthogroups_2024-Update
evm.model.tig00001355.7 No alias (at2g39990 : 223.0) translation initiation factor eIF2... 0.01 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA 16Dec
MF GO:0008233 peptidase activity IEA 16Dec
MF GO:0008237 metallopeptidase activity IEA 16Dec
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Predicted GO
MF GO:0003723 RNA binding IEP Predicted GO
MF GO:0003735 structural constituent of ribosome IEP Predicted GO
MF GO:0003743 translation initiation factor activity IEP Predicted GO
MF GO:0003746 translation elongation factor activity IEP Predicted GO
MF GO:0003937 IMP cyclohydrolase activity IEP Predicted GO
MF GO:0004643 phosphoribosylaminoimidazolecarboxamide formyltransferase activity IEP Predicted GO
MF GO:0005198 structural molecule activity IEP Predicted GO
CC GO:0005575 cellular_component IEP Predicted GO
CC GO:0005732 small nucleolar ribonucleoprotein complex IEP Predicted GO
CC GO:0005840 ribosome IEP Predicted GO
CC GO:0005852 eukaryotic translation initiation factor 3 complex IEP Predicted GO
BP GO:0006364 rRNA processing IEP Predicted GO
BP GO:0006412 translation IEP Predicted GO
BP GO:0006414 translational elongation IEP Predicted GO
BP GO:0006518 peptide metabolic process IEP Predicted GO
BP GO:0006807 nitrogen compound metabolic process IEP Predicted GO
MF GO:0008135 translation factor activity, RNA binding IEP Predicted GO
BP GO:0008150 biological_process IEP Predicted GO
BP GO:0008152 metabolic process IEP Predicted GO
BP GO:0009058 biosynthetic process IEP Predicted GO
BP GO:0009059 macromolecule biosynthetic process IEP Predicted GO
BP GO:0009987 cellular process IEP Predicted GO
BP GO:0016072 rRNA metabolic process IEP Predicted GO
MF GO:0016742 hydroxymethyl-, formyl- and related transferase activity IEP Predicted GO
MF GO:0016814 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines IEP Predicted GO
MF GO:0019238 cyclohydrolase activity IEP Predicted GO
BP GO:0019538 protein metabolic process IEP Predicted GO
MF GO:0019843 rRNA binding IEP Predicted GO
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Predicted GO
CC GO:0032991 protein-containing complex IEP Predicted GO
CC GO:0034457 Mpp10 complex IEP Predicted GO
BP GO:0034470 ncRNA processing IEP Predicted GO
BP GO:0034641 cellular nitrogen compound metabolic process IEP Predicted GO
BP GO:0034645 cellular macromolecule biosynthetic process IEP Predicted GO
BP GO:0034660 ncRNA metabolic process IEP Predicted GO
BP GO:0042254 ribosome biogenesis IEP Predicted GO
BP GO:0043043 peptide biosynthetic process IEP Predicted GO
BP GO:0043170 macromolecule metabolic process IEP Predicted GO
CC GO:0043226 organelle IEP Predicted GO
CC GO:0043228 non-membrane-bounded organelle IEP Predicted GO
CC GO:0043229 intracellular organelle IEP Predicted GO
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Predicted GO
BP GO:0043603 cellular amide metabolic process IEP Predicted GO
BP GO:0043604 amide biosynthetic process IEP Predicted GO
BP GO:0044237 cellular metabolic process IEP Predicted GO
BP GO:0044238 primary metabolic process IEP Predicted GO
BP GO:0044249 cellular biosynthetic process IEP Predicted GO
BP GO:0044260 cellular macromolecule metabolic process IEP Predicted GO
BP GO:0044267 cellular protein metabolic process IEP Predicted GO
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Predicted GO
CC GO:0044424 intracellular part IEP Predicted GO
CC GO:0044444 cytoplasmic part IEP Predicted GO
CC GO:0044452 nucleolar part IEP Predicted GO
CC GO:0044464 cell part IEP Predicted GO
BP GO:0071704 organic substance metabolic process IEP Predicted GO
BP GO:1901564 organonitrogen compound metabolic process IEP Predicted GO
BP GO:1901566 organonitrogen compound biosynthetic process IEP Predicted GO
BP GO:1901576 organic substance biosynthetic process IEP Predicted GO
CC GO:1990904 ribonucleoprotein complex IEP Predicted GO
InterPro domains Description Start Stop
IPR000555 JAMM/MPN+_dom 22 126
IPR024969 Rpn11/EIF3F_C 174 280
No external refs found!