Sobic.009G221400.1

Description : RAV/NGATHA-type transcription factor & AP2-RAV-type transcription factor *(EDF)

Gene families : OG_42_0000305 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000305_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Sorghum bicolor: Sobic.009G221400.1
Cluster	HCAA Clusters: Cluster_172

Target	Alias	Description	ECC score	Gene Family Method
A4A49_20433	No alias	b3 domain-containing transcription factor nga3	0.05	Orthogroups_2024-Update
Bradi3g32140	No alias	AP2/B3-like transcriptional factor family protein	0.04	Orthogroups_2024-Update
Brara.J00079.1	No alias	RAV/NGATHA-type transcription factor	0.04	Orthogroups_2024-Update
Glyma.02G200500	No alias	AP2/B3-like transcriptional factor family protein	0.03	Orthogroups_2024-Update
HORVU3Hr1G010100.2	No alias	RAV/NGATHA-type transcription factor & AP2-RAV-type...	0.03	Orthogroups_2024-Update
Mp2g22250.1	No alias	transcription factor (RAV/NGATHA). transcription factor (AP2-RAV)	0.02	Orthogroups_2024-Update
Seita.5G280700.1	No alias	RAV/NGATHA-type transcription factor & AP2-RAV-type...	0.03	Orthogroups_2024-Update
Sobic.008G041100.1	No alias	RAV/NGATHA-type transcription factor	0.07	Orthogroups_2024-Update
Solyc04g007000	No alias	AP2/B3 transcription factor family protein (AHRD V3.3...	0.03	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	16Dec
MF	GO:0003700	DNA-binding transcription factor activity	IEA	16Dec
MF	GO:0005488	binding	None	Extended
BP	GO:0006355	regulation of transcription, DNA-templated	IEA	16Dec
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0005215	transporter activity	IEP	Predicted GO
MF	GO:0022857	transmembrane transporter activity	IEP	Predicted GO
BP	GO:0055085	transmembrane transport	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR003340	B3_DNA-bd	215	316
IPR001471	AP2/ERF_dom	81	129

External Links

No external refs found!

Sobic.009G221400.1

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation