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  5. Sobic.009G221600.3

Sobic.009G221600.3


Description : RING-H2-class CTL-subclass E3 ubiquitin ligase


Gene families : OG_42_0000181 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000181_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor: Sobic.009G221600.3
Cluster HCAA Clusters: Cluster_62

Target Alias Description ECC score Gene Family Method Actions
At5g42940 No alias Probable E3 ubiquitin-protein ligase RHG1A... 0.04 Orthogroups_2024-Update
GRMZM2G061663 No alias RING/U-box superfamily protein 0.05 Orthogroups_2024-Update
GRMZM2G165044 No alias RING/U-box superfamily protein 0.05 Orthogroups_2024-Update
Glyma.06G234300 No alias RING/U-box superfamily protein 0.04 Orthogroups_2024-Update
Glyma.06G234500 No alias RING/U-box superfamily protein 0.04 Orthogroups_2024-Update
Glyma.14G134600 No alias RING/U-box superfamily protein 0.03 Orthogroups_2024-Update
Glyma.19G180000 No alias RING/U-box superfamily protein 0.02 Orthogroups_2024-Update
HORVU3Hr1G054900.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Potri.007G045500 No alias RING/U-box superfamily protein 0.02 Orthogroups_2024-Update
Sobic.009G232800.1 No alias RING-H2-class CTL-subclass E3 ubiquitin ligase 0.03 Orthogroups_2024-Update
Solyc08g006460 No alias RING/U-box superfamily protein (AHRD V3.3 *** AT5G10650.2) 0.02 Orthogroups_2024-Update
Solyc10g050170 No alias RING/U-box superfamily protein (AHRD V3.3 *** AT2G15530.7) 0.03 Orthogroups_2024-Update
Sopen08g002410 No alias Ring finger domain 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0004497 monooxygenase activity IEP Predicted GO
MF GO:0004568 chitinase activity IEP Predicted GO
MF GO:0005506 iron ion binding IEP Predicted GO
BP GO:0006022 aminoglycan metabolic process IEP Predicted GO
BP GO:0006026 aminoglycan catabolic process IEP Predicted GO
BP GO:0006030 chitin metabolic process IEP Predicted GO
BP GO:0006032 chitin catabolic process IEP Predicted GO
BP GO:0006040 amino sugar metabolic process IEP Predicted GO
MF GO:0008061 chitin binding IEP Predicted GO
MF GO:0008144 drug binding IEP Predicted GO
MF GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen IEP Predicted GO
BP GO:0016998 cell wall macromolecule catabolic process IEP Predicted GO
MF GO:0020037 heme binding IEP Predicted GO
BP GO:0042737 drug catabolic process IEP Predicted GO
BP GO:0044036 cell wall macromolecule metabolic process IEP Predicted GO
BP GO:0046348 amino sugar catabolic process IEP Predicted GO
MF GO:0046906 tetrapyrrole binding IEP Predicted GO
BP GO:1901071 glucosamine-containing compound metabolic process IEP Predicted GO
BP GO:1901072 glucosamine-containing compound catabolic process IEP Predicted GO
InterPro domains Description Start Stop
IPR001841 Znf_RING 328 370
No external refs found!