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  5. Sobic.009G223200.1

Sobic.009G223200.1


Description : Unknown function


Gene families : OG_42_0000921 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000921_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor: Sobic.009G223200.1
Cluster HCAA Clusters: Cluster_1

Target Alias Description ECC score Gene Family Method Actions
120007 No alias CRS1 / YhbY (CRM) domain-containing protein 0.02 Orthogroups_2024-Update
412905 No alias CRS1 / YhbY (CRM) domain-containing protein 0.02 Orthogroups_2024-Update
At3g01370 No alias CRM-domain containing factor CFM2, chloroplastic... 0.03 Orthogroups_2024-Update
Bradi2g17390 No alias CRS1 / YhbY (CRM) domain-containing protein 0.04 Orthogroups_2024-Update
Bradi3g21852 No alias ortholog of maize chloroplast splicing factor CRS1 0.05 Orthogroups_2024-Update
Bradi4g14900 No alias CRM family member 3A 0.05 Orthogroups_2024-Update
Bradi4g28800 No alias CRS1 / YhbY (CRM) domain-containing protein 0.03 Orthogroups_2024-Update
Bradi5g12660 No alias CRM family member 2 0.05 Orthogroups_2024-Update
Brara.E01957.1 No alias plastidial RNA splicing factor *(CFM3) 0.02 Orthogroups_2024-Update
Brara.E03650.1 No alias plastidial RNA splicing factor *(CFM2) 0.03 Orthogroups_2024-Update
Brara.K01693.1 No alias plastidial RNA splicing factor *(CFM3) 0.04 Orthogroups_2024-Update
GRMZM5G813259 No alias CRS1 / YhbY (CRM) domain-containing protein 0.05 Orthogroups_2024-Update
Glyma.07G092300 No alias CRS1 / YhbY (CRM) domain-containing protein 0.04 Orthogroups_2024-Update
Glyma.17G054400 No alias CRS1 / YhbY (CRM) domain-containing protein 0.04 Orthogroups_2024-Update
Glyma.19G014000 No alias CRM family member 2 0.04 Orthogroups_2024-Update
Glyma.20G205000 No alias CRM family member 3A 0.03 Orthogroups_2024-Update
Kfl00095_0160 kfl00095_0160_v1.1 (at3g18390 : 154.0) embryo defective 1865 (EMB1865);... 0.03 Orthogroups_2024-Update
LOC_Os04g39060 No alias CRS1/YhbY domain containing protein, expressed 0.03 Orthogroups_2024-Update
LOC_Os05g47850 No alias chloroplastic group IIA intron splicing facilitator... 0.03 Orthogroups_2024-Update
Mp3g06280.1 No alias CRM-domain containing factor CFM3,... 0.03 Orthogroups_2024-Update
Potri.006G149000 No alias CRS1 / YhbY (CRM) domain-containing protein 0.07 Orthogroups_2024-Update
Potri.012G056100 No alias CRS1 / YhbY (CRM) domain-containing protein 0.03 Orthogroups_2024-Update
Pp1s70_29V6 No alias crm family member 3 0.02 Orthogroups_2024-Update
Seita.2G185900.1 No alias Unknown function 0.05 Orthogroups_2024-Update
Seita.3G156100.1 No alias Unknown function 0.08 Orthogroups_2024-Update
Seita.7G127900.1 No alias plastidial RNA splicing factor *(CFM2) 0.09 Orthogroups_2024-Update
Seita.8G170300.1 No alias plastidial RNA splicing factor *(CFM3) 0.05 Orthogroups_2024-Update
Sobic.002G181000.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Solyc02g087250 No alias Chloroplastic group IIA intron splicing facilitator... 0.08 Orthogroups_2024-Update
Solyc03g119450 No alias Chloroplastic group IIA intron splicing facilitator CRS1... 0.04 Orthogroups_2024-Update
Solyc07g039500 No alias Chloroplastic group IIA intron splicing facilitator CRS1... 0.03 Orthogroups_2024-Update
Sopen02g031990 No alias CRS1 / YhbY (CRM) domain 0.05 Orthogroups_2024-Update
Sopen03g038300 No alias CRS1 / YhbY (CRM) domain 0.05 Orthogroups_2024-Update
Sopen07g019080 No alias CRS1 / YhbY (CRM) domain 0.05 Orthogroups_2024-Update
Sopen09g032270 No alias CRS1 / YhbY (CRM) domain 0.06 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA 16Dec
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Type GO Term Name Evidence Source
MF GO:0000155 phosphorelay sensor kinase activity IEP Predicted GO
MF GO:0000774 adenyl-nucleotide exchange factor activity IEP Predicted GO
MF GO:0001882 nucleoside binding IEP Predicted GO
MF GO:0001883 purine nucleoside binding IEP Predicted GO
MF GO:0003909 DNA ligase activity IEP Predicted GO
MF GO:0003910 DNA ligase (ATP) activity IEP Predicted GO
MF GO:0003916 DNA topoisomerase activity IEP Predicted GO
MF GO:0004000 adenosine deaminase activity IEP Predicted GO
MF GO:0004045 aminoacyl-tRNA hydrolase activity IEP Predicted GO
MF GO:0004518 nuclease activity IEP Predicted GO
MF GO:0004519 endonuclease activity IEP Predicted GO
MF GO:0004525 ribonuclease III activity IEP Predicted GO
MF GO:0004540 ribonuclease activity IEP Predicted GO
MF GO:0004673 protein histidine kinase activity IEP Predicted GO
MF GO:0004784 superoxide dismutase activity IEP Predicted GO
MF GO:0005525 GTP binding IEP Predicted GO
CC GO:0005694 chromosome IEP Predicted GO
BP GO:0006081 cellular aldehyde metabolic process IEP Predicted GO
BP GO:0006139 nucleobase-containing compound metabolic process IEP Predicted GO
BP GO:0006259 DNA metabolic process IEP Predicted GO
BP GO:0006265 DNA topological change IEP Predicted GO
BP GO:0006281 DNA repair IEP Predicted GO
BP GO:0006298 mismatch repair IEP Predicted GO
BP GO:0006310 DNA recombination IEP Predicted GO
BP GO:0006396 RNA processing IEP Predicted GO
BP GO:0006725 cellular aromatic compound metabolic process IEP Predicted GO
BP GO:0006801 superoxide metabolic process IEP Predicted GO
BP GO:0006974 cellular response to DNA damage stimulus IEP Predicted GO
BP GO:0009240 isopentenyl diphosphate biosynthetic process IEP Predicted GO
BP GO:0009314 response to radiation IEP Predicted GO
BP GO:0009416 response to light stimulus IEP Predicted GO
BP GO:0009581 detection of external stimulus IEP Predicted GO
BP GO:0009582 detection of abiotic stimulus IEP Predicted GO
BP GO:0009583 detection of light stimulus IEP Predicted GO
BP GO:0009584 detection of visible light IEP Predicted GO
BP GO:0009628 response to abiotic stimulus IEP Predicted GO
MF GO:0015631 tubulin binding IEP Predicted GO
MF GO:0016721 oxidoreductase activity, acting on superoxide radicals as acceptor IEP Predicted GO
MF GO:0016725 oxidoreductase activity, acting on CH or CH2 groups IEP Predicted GO
MF GO:0016726 oxidoreductase activity, acting on CH or CH2 groups, NAD or NADP as acceptor IEP Predicted GO
MF GO:0016775 phosphotransferase activity, nitrogenous group as acceptor IEP Predicted GO
MF GO:0016787 hydrolase activity IEP Predicted GO
MF GO:0016788 hydrolase activity, acting on ester bonds IEP Predicted GO
MF GO:0016814 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines IEP Predicted GO
MF GO:0016886 ligase activity, forming phosphoric ester bonds IEP Predicted GO
MF GO:0019001 guanyl nucleotide binding IEP Predicted GO
MF GO:0019239 deaminase activity IEP Predicted GO
BP GO:0019288 isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway IEP Predicted GO
BP GO:0019682 glyceraldehyde-3-phosphate metabolic process IEP Predicted GO
MF GO:0030983 mismatched DNA binding IEP Predicted GO
MF GO:0031625 ubiquitin protein ligase binding IEP Predicted GO
MF GO:0032296 double-stranded RNA-specific ribonuclease activity IEP Predicted GO
MF GO:0032549 ribonucleoside binding IEP Predicted GO
MF GO:0032550 purine ribonucleoside binding IEP Predicted GO
MF GO:0032561 guanyl ribonucleotide binding IEP Predicted GO
BP GO:0033554 cellular response to stress IEP Predicted GO
MF GO:0042802 identical protein binding IEP Predicted GO
MF GO:0042803 protein homodimerization activity IEP Predicted GO
MF GO:0043015 gamma-tubulin binding IEP Predicted GO
MF GO:0044389 ubiquitin-like protein ligase binding IEP Predicted GO
BP GO:0046483 heterocycle metabolic process IEP Predicted GO
BP GO:0046490 isopentenyl diphosphate metabolic process IEP Predicted GO
BP GO:0050992 dimethylallyl diphosphate biosynthetic process IEP Predicted GO
BP GO:0050993 dimethylallyl diphosphate metabolic process IEP Predicted GO
MF GO:0051087 chaperone binding IEP Predicted GO
BP GO:0051606 detection of stimulus IEP Predicted GO
BP GO:0051716 cellular response to stimulus IEP Predicted GO
MF GO:0051745 4-hydroxy-3-methylbut-2-en-1-yl diphosphate reductase activity IEP Predicted GO
MF GO:0060590 ATPase regulator activity IEP Predicted GO
BP GO:0072593 reactive oxygen species metabolic process IEP Predicted GO
BP GO:0090304 nucleic acid metabolic process IEP Predicted GO
MF GO:0140097 catalytic activity, acting on DNA IEP Predicted GO
MF GO:0140098 catalytic activity, acting on RNA IEP Predicted GO
BP GO:1901360 organic cyclic compound metabolic process IEP Predicted GO
InterPro domains Description Start Stop
IPR001890 RNA-binding_CRM 194 276
IPR001890 RNA-binding_CRM 607 693
IPR001890 RNA-binding_CRM 395 479
No external refs found!