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  5. Sobic.009G223900.2

Sobic.009G223900.2


Description : E3 ubiquitin ligase


Gene families : OG_42_0000370 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000370_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor: Sobic.009G223900.2
Cluster HCAA Clusters: Cluster_60

Target Alias Description ECC score Gene Family Method Actions
Bradi2g11577 No alias RING/FYVE/PHD zinc finger superfamily protein 0.02 Orthogroups_2024-Update
GRMZM2G023755 No alias RING/FYVE/PHD zinc finger superfamily protein 0.02 Orthogroups_2024-Update
PSME_00029909-RA No alias (at3g47550 : 228.0) RING/FYVE/PHD zinc finger... 0.01 Orthogroups_2024-Update
Sobic.003G144600.1 No alias E3 ubiquitin ligase 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA 16Dec
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Type GO Term Name Evidence Source
MF GO:0003885 D-arabinono-1,4-lactone oxidase activity IEP Predicted GO
MF GO:0008483 transaminase activity IEP Predicted GO
MF GO:0016769 transferase activity, transferring nitrogenous groups IEP Predicted GO
MF GO:0016899 oxidoreductase activity, acting on the CH-OH group of donors, oxygen as acceptor IEP Predicted GO
InterPro domains Description Start Stop
IPR011016 Znf_RING-CH 125 170
IPR022143 DUF3675 176 279
No external refs found!