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  5. Sobic.009G228500.2

Sobic.009G228500.2


Description : Unknown function


Gene families : OG_42_0002871 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002871_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor: Sobic.009G228500.2
Cluster HCAA Clusters: Cluster_189

Target Alias Description ECC score Gene Family Method Actions
At3g58660 No alias Ribosomal protein L1p/L10e family... 0.08 Orthogroups_2024-Update
Bradi2g16930 No alias Ribosomal protein L1p/L10e family 0.05 Orthogroups_2024-Update
Brara.D00229.1 No alias Unknown function 0.06 Orthogroups_2024-Update
Brara.G01811.1 No alias Unknown function 0.09 Orthogroups_2024-Update
Cre07.g314100 No alias Ribosomal protein L1p/L10e family 0.1 Orthogroups_2024-Update
Glyma.08G173300 No alias Ribosomal protein L1p/L10e family 0.04 Orthogroups_2024-Update
Glyma.15G254100 No alias Ribosomal protein L1p/L10e family 0.04 Orthogroups_2024-Update
Kfl00186_0100 kfl00186_0100_v1.1 (at3g58660 : 160.0) Ribosomal protein L1p/L10e family;... 0.04 Orthogroups_2024-Update
PSME_00056959-RA No alias (at3g58660 : 305.0) Ribosomal protein L1p/L10e family;... 0.03 Orthogroups_2024-Update
PSME_00057094-RA No alias (at3g58660 : 160.0) Ribosomal protein L1p/L10e family;... 0.04 Orthogroups_2024-Update
Potri.012G145000 No alias Ribosomal protein L1p/L10e family 0.08 Orthogroups_2024-Update
Potri.015G147700 No alias Ribosomal protein L1p/L10e family 0.12 Orthogroups_2024-Update
Pp1s35_41V6 No alias T20N10.10; 60S ribosomal protein-related [Arabidopsis thaliana] 0.04 Orthogroups_2024-Update
Seita.3G150100.1 No alias Unknown function 0.22 Orthogroups_2024-Update
Solyc01g111420 No alias Ribosomal protein L1p/L10e family (AHRD V3.3 *** AT3G58660.1) 0.1 Orthogroups_2024-Update
Solyc04g008790 No alias Ribosomal protein L1 (AHRD V3.3 *** A0A124SGR3_CYNCS) 0.03 Orthogroups_2024-Update
Sopen01g053480 No alias Ribosomal protein L1p/L10e family 0.07 Orthogroups_2024-Update
evm.model.contig_3494.7 No alias no hits & (original description: no original description) 0.04 Orthogroups_2024-Update
evm.model.tig00021721.13 No alias (at2g42650 : 154.0) Ribosomal protein L1p/L10e family;... 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Predicted GO
MF GO:0003723 RNA binding IEP Predicted GO
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP Predicted GO
MF GO:0004842 ubiquitin-protein transferase activity IEP Predicted GO
MF GO:0005488 binding IEP Predicted GO
MF GO:0005515 protein binding IEP Predicted GO
CC GO:0005730 nucleolus IEP Predicted GO
CC GO:0005852 eukaryotic translation initiation factor 3 complex IEP Predicted GO
BP GO:0006396 RNA processing IEP Predicted GO
BP GO:0016567 protein ubiquitination IEP Predicted GO
MF GO:0016859 cis-trans isomerase activity IEP Predicted GO
MF GO:0019787 ubiquitin-like protein transferase activity IEP Predicted GO
BP GO:0032446 protein modification by small protein conjugation IEP Predicted GO
BP GO:0040008 regulation of growth IEP Predicted GO
BP GO:0045927 positive regulation of growth IEP Predicted GO
MF GO:0051087 chaperone binding IEP Predicted GO
BP GO:0070647 protein modification by small protein conjugation or removal IEP Predicted GO
MF GO:0097159 organic cyclic compound binding IEP Predicted GO
MF GO:1901363 heterocyclic compound binding IEP Predicted GO
InterPro domains Description Start Stop
IPR028364 Ribosomal_L1/biogenesis 23 242
No external refs found!