Sobic.009G250400.1

Description : basal Sigma-type transcription factor

Gene families : OG_42_0006208 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0006208_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Sorghum bicolor: Sobic.009G250400.1
Cluster	HCAA Clusters: Cluster_105

Target	Alias	Description	ECC score	Gene Family Method
147096	No alias	sigma factor E	0.05	Orthogroups_2024-Update
A4A49_16573	No alias	rna polymerase sigma factor sige, chloroplasticmitochondrial	0.06	Orthogroups_2024-Update
At5g24120	No alias	RNA polymerase sigma factor sigE,...	0.06	Orthogroups_2024-Update
Bradi2g14790	No alias	sigma factor E	0.04	Orthogroups_2024-Update
Brara.F02635.1	No alias	basal Sigma-type transcription factor	0.08	Orthogroups_2024-Update
Brara.I00582.1	No alias	basal Sigma-type transcription factor	0.04	Orthogroups_2024-Update
GRMZM2G077436	No alias	sigma factor E	0.09	Orthogroups_2024-Update
Glyma.04G238200	No alias	sigma factor E	0.03	Orthogroups_2024-Update
Glyma.06G125700	No alias	sigma factor E	0.05	Orthogroups_2024-Update
Glyma.13G041200	No alias	sigma factor E	0.03	Orthogroups_2024-Update
Glyma.14G160600	No alias	sigma factor E	0.04	Orthogroups_2024-Update
HORVU1Hr1G093180.1	No alias	basal Sigma-type transcription factor	0.09	Orthogroups_2024-Update
Kfl00791_0030	kfl00791_0030_v1.1	(at5g24120 : 128.0) Encodes a specialized sigma factor...	0.03	Orthogroups_2024-Update
LOC_Os05g50930	No alias	RNA polymerase sigma factor, putative, expressed	0.06	Orthogroups_2024-Update
Mp3g02240.1	No alias	basal transcription factor (Sigma)	0.04	Orthogroups_2024-Update
PSME_00012507-RA	No alias	(at5g24120 : 203.0) Encodes a specialized sigma factor...	0.03	Orthogroups_2024-Update
Potri.012G031100	No alias	sigma factor E	0.05	Orthogroups_2024-Update
Potri.015G022100	No alias	sigma factor E	0.05	Orthogroups_2024-Update
Pp1s92_33V6	No alias	rna polymerase sigma factor	0.03	Orthogroups_2024-Update
Seita.3G126900.1	No alias	basal Sigma-type transcription factor	0.16	Orthogroups_2024-Update
Solyc03g007370	No alias	Sigma factor (AHRD V3.3 *** A0A0G2STU5_9ROSI)	0.05	Orthogroups_2024-Update
Sopen03g003330	No alias	Sigma-70 region 3	0.04	Orthogroups_2024-Update
evm.model.contig_429.6	No alias	no hits & (original description: no original description)	0.01	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003700	DNA-binding transcription factor activity	IEA	16Dec
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006352	DNA-templated transcription, initiation	IEA	16Dec
BP	GO:0006355	regulation of transcription, DNA-templated	IEA	16Dec
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0018130	heterocycle biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0019438	aromatic compound biosynthetic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0032774	RNA biosynthetic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034654	nucleobase-containing compound biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901362	organic cyclic compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
BP	GO:0000096	sulfur amino acid metabolic process	IEP	Predicted GO
BP	GO:0000097	sulfur amino acid biosynthetic process	IEP	Predicted GO
BP	GO:0000272	polysaccharide catabolic process	IEP	Predicted GO
MF	GO:0004096	catalase activity	IEP	Predicted GO
MF	GO:0005215	transporter activity	IEP	Predicted GO
CC	GO:0005575	cellular_component	IEP	Predicted GO
BP	GO:0005976	polysaccharide metabolic process	IEP	Predicted GO
BP	GO:0006082	organic acid metabolic process	IEP	Predicted GO
BP	GO:0006534	cysteine metabolic process	IEP	Predicted GO
BP	GO:0006535	cysteine biosynthetic process from serine	IEP	Predicted GO
BP	GO:0006563	L-serine metabolic process	IEP	Predicted GO
BP	GO:0006629	lipid metabolic process	IEP	Predicted GO
BP	GO:0006631	fatty acid metabolic process	IEP	Predicted GO
BP	GO:0006810	transport	IEP	Predicted GO
MF	GO:0009001	serine O-acetyltransferase activity	IEP	Predicted GO
BP	GO:0009069	serine family amino acid metabolic process	IEP	Predicted GO
BP	GO:0009070	serine family amino acid biosynthetic process	IEP	Predicted GO
MF	GO:0009975	cyclase activity	IEP	Predicted GO
MF	GO:0009976	tocopherol cyclase activity	IEP	Predicted GO
MF	GO:0015291	secondary active transmembrane transporter activity	IEP	Predicted GO
MF	GO:0015297	antiporter activity	IEP	Predicted GO
CC	GO:0016020	membrane	IEP	Predicted GO
BP	GO:0016052	carbohydrate catabolic process	IEP	Predicted GO
BP	GO:0016053	organic acid biosynthetic process	IEP	Predicted GO
MF	GO:0016161	beta-amylase activity	IEP	Predicted GO
MF	GO:0016407	acetyltransferase activity	IEP	Predicted GO
MF	GO:0016412	serine O-acyltransferase activity	IEP	Predicted GO
MF	GO:0016413	O-acetyltransferase activity	IEP	Predicted GO
MF	GO:0016701	oxidoreductase activity, acting on single donors with incorporation of molecular oxygen	IEP	Predicted GO
MF	GO:0016702	oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen	IEP	Predicted GO
BP	GO:0019344	cysteine biosynthetic process	IEP	Predicted GO
BP	GO:0019752	carboxylic acid metabolic process	IEP	Predicted GO
MF	GO:0022857	transmembrane transporter activity	IEP	Predicted GO
BP	GO:0032787	monocarboxylic acid metabolic process	IEP	Predicted GO
BP	GO:0043436	oxoacid metabolic process	IEP	Predicted GO
MF	GO:0044183	protein binding involved in protein folding	IEP	Predicted GO
BP	GO:0044255	cellular lipid metabolic process	IEP	Predicted GO
BP	GO:0044283	small molecule biosynthetic process	IEP	Predicted GO
MF	GO:0045300	acyl-[acyl-carrier-protein] desaturase activity	IEP	Predicted GO
BP	GO:0046394	carboxylic acid biosynthetic process	IEP	Predicted GO
BP	GO:0051179	localization	IEP	Predicted GO
MF	GO:0051213	dioxygenase activity	IEP	Predicted GO
BP	GO:0051234	establishment of localization	IEP	Predicted GO
BP	GO:0055085	transmembrane transport	IEP	Predicted GO
BP	GO:0072330	monocarboxylic acid biosynthetic process	IEP	Predicted GO
BP	GO:0110102	chloroplast ribulose bisphosphate carboxylase complex assembly	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR007624	RNA_pol_sigma70_r3	222	261
IPR007624	RNA_pol_sigma70_r3	350	417
IPR007627	RNA_pol_sigma70_r2	267	333
IPR007630	RNA_pol_sigma70_r4	437	490

External Links

No external refs found!

Sobic.009G250400.1

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation