Sobic.010G013900.1


Description : RNA editing factor *(MORF)


Gene families : OG_42_0000510 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000510_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor: Sobic.010G013900.1
Cluster HCAA Clusters: Cluster_66

Target Alias Description ECC score Gene Family Method Actions
At1g11430 No alias Multiple organellar RNA editing factor 9, chloroplastic... 0.03 Orthogroups_2024-Update
At1g32580 No alias Multiple organellar RNA editing factor 5,... 0.02 Orthogroups_2024-Update
At3g15000 No alias Multiple organellar RNA editing factor 8,... 0.02 Orthogroups_2024-Update
Bradi3g14650 No alias plastid developmental protein DAG, putative 0.04 Orthogroups_2024-Update
Bradi4g22160 No alias Function unknown 0.09 Orthogroups_2024-Update
Bradi5g20660 No alias differentiation and greening-like 1 0.03 Orthogroups_2024-Update
Brara.A01086.1 No alias RNA editing factor *(MORF) 0.05 Orthogroups_2024-Update
Brara.C03552.1 No alias RNA editing factor *(MORF) 0.08 Orthogroups_2024-Update
Brara.D02033.1 No alias RNA editing factor *(MORF) 0.03 Orthogroups_2024-Update
Brara.D02132.1 No alias RNA editing factor *(MORF) 0.02 Orthogroups_2024-Update
Brara.E00914.1 No alias RNA editing factor *(MORF) 0.07 Orthogroups_2024-Update
Brara.F00767.1 No alias RNA editing factor *(MORF) 0.05 Orthogroups_2024-Update
Brara.G00411.1 No alias RNA editing factor *(MORF) 0.05 Orthogroups_2024-Update
Brara.K01789.1 No alias RNA editing factor *(MORF) 0.04 Orthogroups_2024-Update
GRMZM2G003765 No alias plastid developmental protein DAG, putative 0.04 Orthogroups_2024-Update
GRMZM2G383540 No alias plastid developmental protein DAG, putative 0.05 Orthogroups_2024-Update
GRMZM5G808811 No alias differentiation and greening-like 1 0.04 Orthogroups_2024-Update
Glyma.10G005100 No alias differentiation and greening-like 1 0.02 Orthogroups_2024-Update
Glyma.10G183800 No alias differentiation and greening-like 1 0.03 Orthogroups_2024-Update
Glyma.12G169200 No alias Function unknown 0.03 Orthogroups_2024-Update
Glyma.12G228400 No alias cobalt ion binding 0.04 Orthogroups_2024-Update
Glyma.13G271400 No alias cobalt ion binding 0.04 Orthogroups_2024-Update
HORVU4Hr1G016440.1 No alias RNA editing factor *(MORF) 0.07 Orthogroups_2024-Update
HORVU7Hr1G008880.2 No alias RNA editing factor *(MORF) 0.03 Orthogroups_2024-Update
HORVU7Hr1G054850.2 No alias RNA editing factor *(MORF) 0.03 Orthogroups_2024-Update
HORVU7Hr1G073170.2 No alias RNA editing factor *(MORF) 0.03 Orthogroups_2024-Update
LOC_Os04g51280 No alias DAG protein, chloroplast precursor, putative, expressed 0.04 Orthogroups_2024-Update
LOC_Os06g02600 No alias DAG protein, chloroplast precursor, putative, expressed 0.03 Orthogroups_2024-Update
Potri.001G393400 No alias cobalt ion binding 0.04 Orthogroups_2024-Update
Seita.4G012800.1 No alias RNA editing factor *(MORF) 0.11 Orthogroups_2024-Update
Seita.4G211100.1 No alias RNA editing factor *(MORF) 0.13 Orthogroups_2024-Update
Seita.6G225500.1 No alias RNA editing factor *(MORF) 0.03 Orthogroups_2024-Update
Seita.7G238200.1 No alias RNA editing factor *(MORF) 0.03 Orthogroups_2024-Update
Seita.8G095000.1 No alias RNA editing factor *(MORF) 0.09 Orthogroups_2024-Update
Sobic.007G034500.1 No alias RNA editing factor *(MORF) 0.03 Orthogroups_2024-Update
Solyc02g079210 No alias DAG protein (AHRD V3.3 *** B6SJX7_MAIZE) 0.03 Orthogroups_2024-Update
Solyc05g054960 No alias Peroxisome biogenesis protein 12 (AHRD V3.3 *** K4C2H2_SOLLC) 0.06 Orthogroups_2024-Update
Solyc06g008220 No alias DAG protein (AHRD V3.3 *** A0A0K9Q0F0_ZOSMR) 0.04 Orthogroups_2024-Update
Solyc10g007180 No alias DAG protein (AHRD V3.3 *** A0A0K9PW98_ZOSMR) 0.03 Orthogroups_2024-Update
Solyc12g014230 No alias DAG protein (AHRD V3.3 *** A0A0K9PW98_ZOSMR) 0.06 Orthogroups_2024-Update
Sopen01g027610 No alias hypothetical protein 0.03 Orthogroups_2024-Update
Sopen02g024010 No alias hypothetical protein 0.05 Orthogroups_2024-Update
Sopen05g033420 No alias hypothetical protein 0.05 Orthogroups_2024-Update
Sopen10g003300 No alias hypothetical protein 0.03 Orthogroups_2024-Update
Sopen12g006020 No alias hypothetical protein 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Predicted GO
MF GO:0003735 structural constituent of ribosome IEP Predicted GO
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP Predicted GO
MF GO:0003924 GTPase activity IEP Predicted GO
MF GO:0004812 aminoacyl-tRNA ligase activity IEP Predicted GO
MF GO:0005198 structural molecule activity IEP Predicted GO
MF GO:0005524 ATP binding IEP Predicted GO
CC GO:0005575 cellular_component IEP Predicted GO
CC GO:0005759 mitochondrial matrix IEP Predicted GO
CC GO:0005840 ribosome IEP Predicted GO
BP GO:0006082 organic acid metabolic process IEP Predicted GO
BP GO:0006139 nucleobase-containing compound metabolic process IEP Predicted GO
BP GO:0006351 transcription, DNA-templated IEP Predicted GO
BP GO:0006399 tRNA metabolic process IEP Predicted GO
BP GO:0006412 translation IEP Predicted GO
BP GO:0006418 tRNA aminoacylation for protein translation IEP Predicted GO
BP GO:0006518 peptide metabolic process IEP Predicted GO
BP GO:0006520 cellular amino acid metabolic process IEP Predicted GO
BP GO:0006725 cellular aromatic compound metabolic process IEP Predicted GO
BP GO:0006807 nitrogen compound metabolic process IEP Predicted GO
MF GO:0008144 drug binding IEP Predicted GO
MF GO:0008565 protein transporter activity IEP Predicted GO
BP GO:0009058 biosynthetic process IEP Predicted GO
BP GO:0009059 macromolecule biosynthetic process IEP Predicted GO
BP GO:0009987 cellular process IEP Predicted GO
BP GO:0016070 RNA metabolic process IEP Predicted GO
MF GO:0016462 pyrophosphatase activity IEP Predicted GO
MF GO:0016779 nucleotidyltransferase activity IEP Predicted GO
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP Predicted GO
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP Predicted GO
MF GO:0016874 ligase activity IEP Predicted GO
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP Predicted GO
MF GO:0017076 purine nucleotide binding IEP Predicted GO
MF GO:0017111 nucleoside-triphosphatase activity IEP Predicted GO
BP GO:0019752 carboxylic acid metabolic process IEP Predicted GO
MF GO:0030554 adenyl nucleotide binding IEP Predicted GO
MF GO:0031267 small GTPase binding IEP Predicted GO
CC GO:0031974 membrane-enclosed lumen IEP Predicted GO
MF GO:0032553 ribonucleotide binding IEP Predicted GO
MF GO:0032555 purine ribonucleotide binding IEP Predicted GO
MF GO:0032559 adenyl ribonucleotide binding IEP Predicted GO
BP GO:0032774 RNA biosynthetic process IEP Predicted GO
MF GO:0032977 membrane insertase activity IEP Predicted GO
CC GO:0032991 protein-containing complex IEP Predicted GO
MF GO:0034062 5'-3' RNA polymerase activity IEP Predicted GO
BP GO:0034641 cellular nitrogen compound metabolic process IEP Predicted GO
BP GO:0034645 cellular macromolecule biosynthetic process IEP Predicted GO
BP GO:0034660 ncRNA metabolic process IEP Predicted GO
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Predicted GO
MF GO:0036094 small molecule binding IEP Predicted GO
BP GO:0043038 amino acid activation IEP Predicted GO
BP GO:0043039 tRNA aminoacylation IEP Predicted GO
BP GO:0043043 peptide biosynthetic process IEP Predicted GO
MF GO:0043168 anion binding IEP Predicted GO
BP GO:0043170 macromolecule metabolic process IEP Predicted GO
CC GO:0043226 organelle IEP Predicted GO
CC GO:0043228 non-membrane-bounded organelle IEP Predicted GO
CC GO:0043229 intracellular organelle IEP Predicted GO
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Predicted GO
CC GO:0043233 organelle lumen IEP Predicted GO
BP GO:0043436 oxoacid metabolic process IEP Predicted GO
BP GO:0043603 cellular amide metabolic process IEP Predicted GO
BP GO:0043604 amide biosynthetic process IEP Predicted GO
BP GO:0044237 cellular metabolic process IEP Predicted GO
BP GO:0044238 primary metabolic process IEP Predicted GO
BP GO:0044249 cellular biosynthetic process IEP Predicted GO
BP GO:0044260 cellular macromolecule metabolic process IEP Predicted GO
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Predicted GO
CC GO:0044424 intracellular part IEP Predicted GO
CC GO:0044444 cytoplasmic part IEP Predicted GO
CC GO:0044464 cell part IEP Predicted GO
BP GO:0046483 heterocycle metabolic process IEP Predicted GO
BP GO:0046907 intracellular transport IEP Predicted GO
BP GO:0051641 cellular localization IEP Predicted GO
BP GO:0051649 establishment of localization in cell IEP Predicted GO
CC GO:0070013 intracellular organelle lumen IEP Predicted GO
BP GO:0090304 nucleic acid metabolic process IEP Predicted GO
MF GO:0097159 organic cyclic compound binding IEP Predicted GO
MF GO:0097367 carbohydrate derivative binding IEP Predicted GO
BP GO:0097659 nucleic acid-templated transcription IEP Predicted GO
MF GO:0097747 RNA polymerase activity IEP Predicted GO
MF GO:0140098 catalytic activity, acting on RNA IEP Predicted GO
MF GO:0140101 catalytic activity, acting on a tRNA IEP Predicted GO
MF GO:1901265 nucleoside phosphate binding IEP Predicted GO
BP GO:1901360 organic cyclic compound metabolic process IEP Predicted GO
MF GO:1901363 heterocyclic compound binding IEP Predicted GO
BP GO:1901564 organonitrogen compound metabolic process IEP Predicted GO
BP GO:1901566 organonitrogen compound biosynthetic process IEP Predicted GO
BP GO:1901576 organic substance biosynthetic process IEP Predicted GO
CC GO:1990904 ribonucleoprotein complex IEP Predicted GO

No InterPro domains available for this sequence

No external refs found!