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  5. Sobic.010G029200.1

Sobic.010G029200.1


Description : MADS/AGL-type transcription factor


Gene families : OG_42_0000009 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor: Sobic.010G029200.1
Cluster HCAA Clusters: Cluster_104

Target Alias Description ECC score Gene Family Method Actions
At3g30260 No alias AGAMOUS-like 79 [Source:UniProtKB/TrEMBL;Acc:Q7X9H6] 0.03 Orthogroups_2024-Update
Bradi4g06867 No alias K-box region and MADS-box transcription factor family protein 0.02 Orthogroups_2024-Update
Brara.C01460.1 No alias MADS/AGL-type transcription factor 0.02 Orthogroups_2024-Update
Brara.I04929.1 No alias MADS/AGL-type transcription factor 0.02 Orthogroups_2024-Update
GRMZM2G471089 No alias K-box region and MADS-box transcription factor family protein 0.02 Orthogroups_2024-Update
Glyma.01G020500 No alias AGAMOUS-like 21 0.04 Orthogroups_2024-Update
Glyma.19G034500 No alias K-box region and MADS-box transcription factor family protein 0.05 Orthogroups_2024-Update
HORVU3Hr1G095080.1 No alias MADS/AGL-type transcription factor 0.04 Orthogroups_2024-Update
HORVU3Hr1G095240.6 No alias MADS/AGL-type transcription factor 0.03 Orthogroups_2024-Update
LOC_Os03g03070 No alias transcription factor, putative, expressed 0.02 Orthogroups_2024-Update
MA_17919g0010 No alias (q6eu39|mads6_orysa : 111.0) MADS-box transcription... 0.03 Orthogroups_2024-Update
Potri.004G130900 No alias AGAMOUS-like 62 0.02 Orthogroups_2024-Update
Potri.004G131100 No alias AGAMOUS-like 29 0.02 Orthogroups_2024-Update
Potri.015G134800 No alias K-box region and MADS-box transcription factor family protein 0.03 Orthogroups_2024-Update
Pp1s26_90V6 No alias agamous-like protein 0.05 Orthogroups_2024-Update
Pp1s88_174V6 No alias mads box 0.03 Orthogroups_2024-Update
Seita.5G404600.1 No alias component *(PISTILLATA) of AP3-PISTILLATA organ-identity... 0.03 Orthogroups_2024-Update
Sobic.007G192900.1 No alias MADS/AGL-type transcription factor 0.03 Orthogroups_2024-Update
Sopen01g045900 No alias SRF-type transcription factor (DNA-binding and... 0.02 Orthogroups_2024-Update
Sopen04g001300 No alias SRF-type transcription factor (DNA-binding and... 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA 16Dec
MF GO:0046983 protein dimerization activity IEA 16Dec
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Type GO Term Name Evidence Source
BP GO:0000272 polysaccharide catabolic process IEP Predicted GO
CC GO:0005743 mitochondrial inner membrane IEP Predicted GO
BP GO:0005976 polysaccharide metabolic process IEP Predicted GO
BP GO:0006820 anion transport IEP Predicted GO
BP GO:0006839 mitochondrial transport IEP Predicted GO
BP GO:0006848 pyruvate transport IEP Predicted GO
BP GO:0006850 mitochondrial pyruvate transmembrane transport IEP Predicted GO
BP GO:0009057 macromolecule catabolic process IEP Predicted GO
BP GO:0015711 organic anion transport IEP Predicted GO
BP GO:0015718 monocarboxylic acid transport IEP Predicted GO
BP GO:0015849 organic acid transport IEP Predicted GO
BP GO:0016052 carbohydrate catabolic process IEP Predicted GO
MF GO:0016160 amylase activity IEP Predicted GO
MF GO:0016161 beta-amylase activity IEP Predicted GO
CC GO:0019866 organelle inner membrane IEP Predicted GO
MF GO:0020037 heme binding IEP Predicted GO
CC GO:0031090 organelle membrane IEP Predicted GO
CC GO:0031966 mitochondrial membrane IEP Predicted GO
BP GO:0034220 ion transmembrane transport IEP Predicted GO
CC GO:0044429 mitochondrial part IEP Predicted GO
MF GO:0046906 tetrapyrrole binding IEP Predicted GO
BP GO:0046942 carboxylic acid transport IEP Predicted GO
MF GO:0048037 cofactor binding IEP Predicted GO
BP GO:0098656 anion transmembrane transport IEP Predicted GO
BP GO:1901475 pyruvate transmembrane transport IEP Predicted GO
BP GO:1903825 organic acid transmembrane transport IEP Predicted GO
BP GO:1905039 carboxylic acid transmembrane transport IEP Predicted GO
BP GO:1990542 mitochondrial transmembrane transport IEP Predicted GO
InterPro domains Description Start Stop
IPR002100 TF_MADSbox 24 66
No external refs found!