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  5. Sobic.010G041700.1

Sobic.010G041700.1


Description : BBX class-IV transcription factor


Gene families : OG_42_0002427 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002427_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor: Sobic.010G041700.1
Cluster HCAA Clusters: Cluster_58

Target Alias Description ECC score Gene Family Method Actions
Bradi4g40250 No alias light-regulated zinc finger protein 1 0.03 Orthogroups_2024-Update
Brara.G03597.1 No alias BBX class-IV transcription factor 0.03 Orthogroups_2024-Update
Glyma.13G265000 No alias light-regulated zinc finger protein 1 0.04 Orthogroups_2024-Update
HORVU3Hr1G026500.6 No alias BBX class-IV transcription factor 0.03 Orthogroups_2024-Update
LOC_Os01g10580 No alias B-box zinc finger family protein, putative, expressed 0.04 Orthogroups_2024-Update
Potri.001G384000 No alias light-regulated zinc finger protein 1 0.04 Orthogroups_2024-Update
Potri.011G105400 No alias light-regulated zinc finger protein 1 0.03 Orthogroups_2024-Update
Seita.4G072000.1 No alias BBX class-IV transcription factor 0.05 Orthogroups_2024-Update
Seita.5G143400.1 No alias BBX class-IV transcription factor 0.06 Orthogroups_2024-Update
Sobic.009G075600.1 No alias BBX class-IV transcription factor 0.03 Orthogroups_2024-Update
Solyc07g062160 No alias Zinc finger, B-box (AHRD V3.3 *** A0A103Y421_CYNCS) 0.03 Orthogroups_2024-Update
Sopen07g030440 No alias B-box zinc finger 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA 16Dec
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Type GO Term Name Evidence Source
BP GO:0000290 deadenylation-dependent decapping of nuclear-transcribed mRNA IEP Predicted GO
BP GO:0000956 nuclear-transcribed mRNA catabolic process IEP Predicted GO
MF GO:0004497 monooxygenase activity IEP Predicted GO
MF GO:0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity IEP Predicted GO
MF GO:0005506 iron ion binding IEP Predicted GO
CC GO:0005856 cytoskeleton IEP Predicted GO
BP GO:0006401 RNA catabolic process IEP Predicted GO
BP GO:0006402 mRNA catabolic process IEP Predicted GO
BP GO:0009435 NAD biosynthetic process IEP Predicted GO
MF GO:0016491 oxidoreductase activity IEP Predicted GO
MF GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen IEP Predicted GO
MF GO:0016763 transferase activity, transferring pentosyl groups IEP Predicted GO
BP GO:0019674 NAD metabolic process IEP Predicted GO
MF GO:0020037 heme binding IEP Predicted GO
BP GO:0043085 positive regulation of catalytic activity IEP Predicted GO
BP GO:0044093 positive regulation of molecular function IEP Predicted GO
MF GO:0046906 tetrapyrrole binding IEP Predicted GO
MF GO:0048037 cofactor binding IEP Predicted GO
BP GO:0050789 regulation of biological process IEP Predicted GO
MF GO:0097159 organic cyclic compound binding IEP Predicted GO
MF GO:1901363 heterocyclic compound binding IEP Predicted GO
InterPro domains Description Start Stop
IPR000315 Znf_B-box 4 47
IPR000315 Znf_B-box 64 95
No external refs found!