1. Home
  2. Species
  3. Sorghum bicolor
  4. Sequence
  5. Sobic.010G068500.1

Sobic.010G068500.1


Description : cyclic nucleotide-gated cation channel *(CNGC)


Gene families : OG_42_0000108 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000108_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor: Sobic.010G068500.1
Cluster HCAA Clusters: Cluster_220

Target Alias Description ECC score Gene Family Method Actions
At1g01340 No alias Probable cyclic nucleotide-gated ion channel 10... 0.02 Orthogroups_2024-Update
Brara.A00709.1 No alias cyclic nucleotide-gated cation channel *(CNGC) 0.03 Orthogroups_2024-Update
Brara.B01180.1 No alias cyclic nucleotide-gated cation channel *(CNGC) 0.03 Orthogroups_2024-Update
GRMZM2G023037 No alias cyclic nucleotide gated channel 8 0.02 Orthogroups_2024-Update
Glyma.09G168600 No alias cyclic nucleotide-binding transporter 1 0.03 Orthogroups_2024-Update
Glyma.12G152300 No alias cyclic nucleotide gated channel 5 0.04 Orthogroups_2024-Update
Glyma.19G255300 No alias cyclic nucleotide gated channel 1 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005216 ion channel activity IEA 16Dec
BP GO:0006811 ion transport IEA 16Dec
CC GO:0016020 membrane IEA 16Dec
BP GO:0055085 transmembrane transport IEA 16Dec
Toggle parental
Type GO Term Name Evidence Source
MF GO:0004521 endoribonuclease activity IEP Predicted GO
MF GO:0004525 ribonuclease III activity IEP Predicted GO
CC GO:0005643 nuclear pore IEP Predicted GO
BP GO:0006396 RNA processing IEP Predicted GO
BP GO:0006397 mRNA processing IEP Predicted GO
BP GO:0016070 RNA metabolic process IEP Predicted GO
BP GO:0016071 mRNA metabolic process IEP Predicted GO
MF GO:0016151 nickel cation binding IEP Predicted GO
MF GO:0016788 hydrolase activity, acting on ester bonds IEP Predicted GO
MF GO:0016891 endoribonuclease activity, producing 5'-phosphomonoesters IEP Predicted GO
MF GO:0016893 endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters IEP Predicted GO
MF GO:0032296 double-stranded RNA-specific ribonuclease activity IEP Predicted GO
InterPro domains Description Start Stop
IPR005821 Ion_trans_dom 77 398
IPR000595 cNMP-bd_dom 493 581
No external refs found!