Sobic.010G068600.1

Description : ligand-gated cation channel *(GLR)

Gene families : OG_42_0000065 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000065_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Sorghum bicolor: Sobic.010G068600.1
Cluster	HCAA Clusters: Cluster_228

Target	Alias	Description	ECC score	Gene Family Method
Bradi1g26030	No alias	glutamate receptor 3.4	0.02	Orthogroups_2024-Update
Bradi1g31350	No alias	glutamate receptor 2.2	0.03	Orthogroups_2024-Update
Bradi4g30850	No alias	glutamate receptor 2.7	0.05	Orthogroups_2024-Update
Bradi4g30880	No alias	glutamate receptor 2.7	0.04	Orthogroups_2024-Update
Brara.D01954.1	No alias	ligand-gated cation channel *(GLR)	0.04	Orthogroups_2024-Update
Glyma.06G233900	No alias	glutamate receptor 2.7	0.05	Orthogroups_2024-Update
Glyma.09G197200	No alias	glutamate receptor 3.3	0.04	Orthogroups_2024-Update
Glyma.13G233300	No alias	glutamate receptor 2.7	0.03	Orthogroups_2024-Update
Glyma.14G083200	No alias	glutamate receptor 2.7	0.05	Orthogroups_2024-Update
LOC_Os02g54640	No alias	glutamate receptor, putative, expressed	0.02	Orthogroups_2024-Update
MA_958834g0010	No alias	(at4g35290 : 358.0) Encodes a putative glutamate...	0.03	Orthogroups_2024-Update
PSME_00001098-RA	No alias	(at2g29120 : 637.0) member of Putative ligand-gated ion...	0.03	Orthogroups_2024-Update
PSME_00001292-RA	No alias	(at4g35290 : 567.0) Encodes a putative glutamate...	0.04	Orthogroups_2024-Update
PSME_00007782-RA	No alias	(at2g17260 : 247.0) Encodes a glutamate receptor....	0.06	Orthogroups_2024-Update
PSME_00021963-RA	No alias	(at1g05200 : 294.0) member of Putative ligand-gated ion...	0.03	Orthogroups_2024-Update
PSME_00023170-RA	No alias	(at1g42540 : 830.0) member of Putative ligand-gated ion...	0.03	Orthogroups_2024-Update
Seita.1G346100.1	No alias	ligand-gated cation channel *(GLR)	0.03	Orthogroups_2024-Update
Sobic.002G208700.1	No alias	ligand-gated cation channel *(GLR)	0.03	Orthogroups_2024-Update
Sobic.002G209100.1	No alias	ligand-gated cation channel *(GLR)	0.05	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005215	transporter activity	None	Extended
MF	GO:0005216	ion channel activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
MF	GO:0015075	ion transmembrane transporter activity	None	Extended
MF	GO:0015267	channel activity	None	Extended
MF	GO:0015276	ligand-gated ion channel activity	IEA	16Dec
MF	GO:0015318	inorganic molecular entity transmembrane transporter activity	None	Extended
CC	GO:0016020	membrane	IEA	16Dec
MF	GO:0022803	passive transmembrane transporter activity	None	Extended
MF	GO:0022834	ligand-gated channel activity	None	Extended
MF	GO:0022836	gated channel activity	None	Extended
MF	GO:0022838	substrate-specific channel activity	None	Extended
MF	GO:0022839	ion gated channel activity	None	Extended
MF	GO:0022857	transmembrane transporter activity	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	IEP	Predicted GO
MF	GO:0003824	catalytic activity	IEP	Predicted GO
MF	GO:0004672	protein kinase activity	IEP	Predicted GO
MF	GO:0005524	ATP binding	IEP	Predicted GO
BP	GO:0005984	disaccharide metabolic process	IEP	Predicted GO
BP	GO:0005991	trehalose metabolic process	IEP	Predicted GO
BP	GO:0005992	trehalose biosynthetic process	IEP	Predicted GO
BP	GO:0006464	cellular protein modification process	IEP	Predicted GO
BP	GO:0006468	protein phosphorylation	IEP	Predicted GO
BP	GO:0006793	phosphorus metabolic process	IEP	Predicted GO
BP	GO:0006796	phosphate-containing compound metabolic process	IEP	Predicted GO
BP	GO:0006807	nitrogen compound metabolic process	IEP	Predicted GO
MF	GO:0008144	drug binding	IEP	Predicted GO
BP	GO:0008152	metabolic process	IEP	Predicted GO
BP	GO:0009311	oligosaccharide metabolic process	IEP	Predicted GO
BP	GO:0009312	oligosaccharide biosynthetic process	IEP	Predicted GO
BP	GO:0009987	cellular process	IEP	Predicted GO
MF	GO:0016301	kinase activity	IEP	Predicted GO
BP	GO:0016310	phosphorylation	IEP	Predicted GO
MF	GO:0016740	transferase activity	IEP	Predicted GO
MF	GO:0016772	transferase activity, transferring phosphorus-containing groups	IEP	Predicted GO
MF	GO:0016773	phosphotransferase activity, alcohol group as acceptor	IEP	Predicted GO
MF	GO:0017076	purine nucleotide binding	IEP	Predicted GO
BP	GO:0019538	protein metabolic process	IEP	Predicted GO
MF	GO:0030246	carbohydrate binding	IEP	Predicted GO
MF	GO:0030554	adenyl nucleotide binding	IEP	Predicted GO
MF	GO:0032553	ribonucleotide binding	IEP	Predicted GO
MF	GO:0032555	purine ribonucleotide binding	IEP	Predicted GO
MF	GO:0032559	adenyl ribonucleotide binding	IEP	Predicted GO
MF	GO:0035639	purine ribonucleoside triphosphate binding	IEP	Predicted GO
MF	GO:0036094	small molecule binding	IEP	Predicted GO
BP	GO:0036211	protein modification process	IEP	Predicted GO
MF	GO:0043167	ion binding	IEP	Predicted GO
MF	GO:0043168	anion binding	IEP	Predicted GO
BP	GO:0043170	macromolecule metabolic process	IEP	Predicted GO
BP	GO:0043412	macromolecule modification	IEP	Predicted GO
BP	GO:0044237	cellular metabolic process	IEP	Predicted GO
BP	GO:0044238	primary metabolic process	IEP	Predicted GO
BP	GO:0044260	cellular macromolecule metabolic process	IEP	Predicted GO
BP	GO:0044267	cellular protein metabolic process	IEP	Predicted GO
BP	GO:0046351	disaccharide biosynthetic process	IEP	Predicted GO
BP	GO:0071704	organic substance metabolic process	IEP	Predicted GO
MF	GO:0097367	carbohydrate derivative binding	IEP	Predicted GO
MF	GO:0140096	catalytic activity, acting on a protein	IEP	Predicted GO
MF	GO:1901265	nucleoside phosphate binding	IEP	Predicted GO
BP	GO:1901564	organonitrogen compound metabolic process	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR001320	Iontro_rcpt	786	814
IPR001828	ANF_lig-bd_rcpt	59	388
IPR001638	Solute-binding_3/MltF_N	468	785

External Links

No external refs found!

Sobic.010G068600.1

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation