Sobic.010G069400.1

Description : component *(eL19) of large ribosomal-subunit (LSU) proteome

Gene families : OG_42_0001643 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001643_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Sorghum bicolor: Sobic.010G069400.1
Cluster	HCAA Clusters: Cluster_124

Target	Alias	Description	ECC score	Gene Family Method
271656	No alias	Ribosomal protein L19e family protein	0.23	Orthogroups_2024-Update
A4A49_58465	No alias	60s ribosomal protein l19-2	0.16	Orthogroups_2024-Update
At3g16780	No alias	60S ribosomal protein L19-2...	0.06	Orthogroups_2024-Update
Bradi1g17920	No alias	Ribosomal protein L19e family protein	0.24	Orthogroups_2024-Update
Bradi1g63010	No alias	Ribosomal protein L19e family protein	0.2	Orthogroups_2024-Update
Brara.I00133.1	No alias	component *(eL19) of large ribosomal-subunit (LSU) proteome	0.17	Orthogroups_2024-Update
Brara.I05560.1	No alias	component *(eL19) of large ribosomal-subunit (LSU) proteome	0.36	Orthogroups_2024-Update
Brara.J00128.1	No alias	component *(eL19) of large ribosomal-subunit (LSU) proteome	0.26	Orthogroups_2024-Update
Cre02.g075700	No alias	Ribosomal protein L19e family protein	0.3	Orthogroups_2024-Update
GRMZM2G116135	No alias	Ribosomal protein L19e family protein	0.14	Orthogroups_2024-Update
Glyma.02G016000	No alias	Ribosomal protein L19e family protein	0.15	Orthogroups_2024-Update
Glyma.03G211000	No alias	Ribosomal protein L19e family protein	0.09	Orthogroups_2024-Update
Glyma.03G216600	No alias	Ribosomal protein L19e family protein	0.04	Orthogroups_2024-Update
Glyma.10G016400	No alias	Ribosomal protein L19e family protein	0.04	Orthogroups_2024-Update
Glyma.19G208200	No alias	Ribosomal protein L19e family protein	0.06	Orthogroups_2024-Update
Glyma.19G213200	No alias	Ribosomal protein L19e family protein	0.07	Orthogroups_2024-Update
HORVU2Hr1G018700.1	No alias	component *(eL19) of large ribosomal-subunit (LSU) proteome	0.09	Orthogroups_2024-Update
HORVU4Hr1G049670.2	No alias	component *(eL19) of large ribosomal-subunit (LSU) proteome	0.08	Orthogroups_2024-Update
Kfl00915_0030	kfl00915_0030_v1.1	(at1g02780 : 290.0) embryo defective 2386 (emb2386);...	0.08	Orthogroups_2024-Update
MA_102433g0010	No alias	(at1g02780 : 271.0) embryo defective 2386 (emb2386);...	0.03	Orthogroups_2024-Update
MA_1839g0010	No alias	(at1g02780 : 287.0) embryo defective 2386 (emb2386);...	0.1	Orthogroups_2024-Update
MA_22977g0010	No alias	(at1g02780 : 282.0) embryo defective 2386 (emb2386);...	0.13	Orthogroups_2024-Update
Mp7g09050.1	No alias	component RPL19 of LSU proteome component	0.17	Orthogroups_2024-Update
PSME_00037660-RA	No alias	(at1g02780 : 269.0) embryo defective 2386 (emb2386);...	0.03	Orthogroups_2024-Update
PSME_00044681-RA	No alias	(at3g16780 : 285.0) Ribosomal protein L19e family...	0.07	Orthogroups_2024-Update
Potri.012G037500	No alias	Ribosomal protein L19e family protein	0.05	Orthogroups_2024-Update
Potri.017G140800	No alias	Ribosomal protein L19e family protein	0.04	Orthogroups_2024-Update
Pp1s121_144V6	No alias	60s ribosomal protein	0.28	Orthogroups_2024-Update
Pp1s144_37V6	No alias	ribosomal protein l19	0.25	Orthogroups_2024-Update
Pp1s235_118V6	No alias	60s ribosomal protein	0.14	Orthogroups_2024-Update
Pp1s302_25V6	No alias	ribosomal protein l19	0.07	Orthogroups_2024-Update
Pp1s3_375V6	No alias	60s ribosomal protein l19-3	0.21	Orthogroups_2024-Update
Pp1s50_102V6	No alias	60s ribosomal protein l19-3	0.18	Orthogroups_2024-Update
Pp1s83_173V6	No alias	60s ribosomal protein	0.05	Orthogroups_2024-Update
Pp1s83_174V6	No alias	60s ribosomal protein	0.02	Orthogroups_2024-Update
Seita.4G043900.1	No alias	component *(eL19) of large ribosomal-subunit (LSU) proteome	0.25	Orthogroups_2024-Update
Sobic.003G196800.1	No alias	component *(eL19) of large ribosomal-subunit (LSU) proteome	0.04	Orthogroups_2024-Update
Solyc06g009210	No alias	Ribosomal protein L19 (AHRD V3.3 *** K4C3V1_SOLLC)	0.1	Orthogroups_2024-Update
Solyc09g075430	No alias	Ribosomal protein L19 (AHRD V3.3 *** K4CVC0_SOLLC)	0.16	Orthogroups_2024-Update
Sopen06g003980	No alias	Ribosomal protein L19e	0.08	Orthogroups_2024-Update
Sopen09g030210	No alias	Ribosomal protein L19e	0.14	Orthogroups_2024-Update
evm.model.contig_735.3	No alias	(at3g16780 : 205.0) Ribosomal protein L19e family...	0.17	Orthogroups_2024-Update
evm.model.tig00021181.1	No alias	(at1g02780 : 206.0) embryo defective 2386 (emb2386);...	0.19	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	16Dec
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	IEA	16Dec
BP	GO:0006412	translation	IEA	16Dec
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	cellular amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044267	cellular protein metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044444	cytoplasmic part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
CC	GO:1990904	ribonucleoprotein complex	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0001882	nucleoside binding	IEP	Predicted GO
MF	GO:0001883	purine nucleoside binding	IEP	Predicted GO
MF	GO:0003723	RNA binding	IEP	Predicted GO
MF	GO:0003746	translation elongation factor activity	IEP	Predicted GO
MF	GO:0003924	GTPase activity	IEP	Predicted GO
MF	GO:0005525	GTP binding	IEP	Predicted GO
CC	GO:0005783	endoplasmic reticulum	IEP	Predicted GO
BP	GO:0006414	translational elongation	IEP	Predicted GO
MF	GO:0008135	translation factor activity, RNA binding	IEP	Predicted GO
MF	GO:0016462	pyrophosphatase activity	IEP	Predicted GO
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	IEP	Predicted GO
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	IEP	Predicted GO
MF	GO:0017111	nucleoside-triphosphatase activity	IEP	Predicted GO
MF	GO:0019001	guanyl nucleotide binding	IEP	Predicted GO
MF	GO:0019843	rRNA binding	IEP	Predicted GO
BP	GO:0022613	ribonucleoprotein complex biogenesis	IEP	Predicted GO
MF	GO:0030515	snoRNA binding	IEP	Predicted GO
MF	GO:0032549	ribonucleoside binding	IEP	Predicted GO
MF	GO:0032550	purine ribonucleoside binding	IEP	Predicted GO
MF	GO:0032561	guanyl ribonucleotide binding	IEP	Predicted GO
MF	GO:0035596	methylthiotransferase activity	IEP	Predicted GO
BP	GO:0042254	ribosome biogenesis	IEP	Predicted GO
MF	GO:0050497	transferase activity, transferring alkylthio groups	IEP	Predicted GO
MF	GO:0051539	4 iron, 4 sulfur cluster binding	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR000196	Ribosomal_L19/L19e	4	145

External Links

No external refs found!

Sobic.010G069400.1

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation