Sobic.010G073600.1

Description : ARF-type transcription factor & auxin signal mediator *(ARF7/ARF19)

Gene families : OG_42_0000050 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000050_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Sorghum bicolor: Sobic.010G073600.1

Target	Alias	Description	ECC score	Gene Family Method
A4A49_26861	No alias	auxin response factor 18	0.01	Orthogroups_2024-Update
A4A49_30370	No alias	auxin response factor 11	0.04	Orthogroups_2024-Update
At1g34410	No alias	Putative auxin response factor 21...	0.02	Orthogroups_2024-Update
Bradi3g04920	No alias	auxin response factor 6	0.04	Orthogroups_2024-Update
Bradi4g17410	No alias	auxin response factor 2	0.02	Orthogroups_2024-Update
Bradi5g25767	No alias	auxin response factor 6	0.04	Orthogroups_2024-Update
Brara.H02379.1	No alias	ARF-type transcription factor & auxin signal mediator...	0.01	Orthogroups_2024-Update
GRMZM2G056120	No alias	Transcriptional factor B3 family protein /...	0.03	Orthogroups_2024-Update
GRMZM2G390641	No alias	auxin response factor 16	0.01	Orthogroups_2024-Update
GRMZM5G874163	No alias	Transcriptional factor B3 family protein /...	0.01	Orthogroups_2024-Update
Glyma.01G002100	No alias	Transcriptional factor B3 family protein /...	0.03	Orthogroups_2024-Update
Glyma.07G130400	No alias	Transcriptional factor B3 family protein /...	0.02	Orthogroups_2024-Update
Glyma.13G112600	No alias	Transcriptional factor B3 family protein /...	0.03	Orthogroups_2024-Update
Glyma.13G174000	No alias	Transcriptional factor B3 family protein /...	0.01	Orthogroups_2024-Update
Glyma.13G221400	No alias	auxin response factor 8	0.01	Orthogroups_2024-Update
Glyma.15G181000	No alias	auxin response factor 19	0.02	Orthogroups_2024-Update
HORVU2Hr1G125740.1	No alias	Unknown function	0.01	Orthogroups_2024-Update
HORVU3Hr1G072340.1	No alias	ARF-type transcription factor	0.03	Orthogroups_2024-Update
HORVU7Hr1G106280.1	No alias	ARF-type transcription factor	0.04	Orthogroups_2024-Update
LOC_Os02g41800	No alias	auxin response factor, putative, expressed	0.02	Orthogroups_2024-Update
LOC_Os06g09660	No alias	auxin response factor, putative, expressed	0.01	Orthogroups_2024-Update
LOC_Os06g48950	No alias	auxin response factor 19, putative, expressed	0.03	Orthogroups_2024-Update
LOC_Os07g08540	No alias	auxin response factor 20, putative, expressed	0.03	Orthogroups_2024-Update
MA_40335g0010	No alias	(at5g62000 : 752.0) Encodes an auxin response factor....	0.01	Orthogroups_2024-Update
PSME_00020341-RA	No alias	(at1g19220 : 630.0) Encodes an auxin response factor...	0.01	Orthogroups_2024-Update
PSME_00047903-RA	No alias	(at4g30080 : 523.0) Involved in root cap cell...	0.01	Orthogroups_2024-Update
Potri.004G078200	No alias	auxin response factor 8	0.02	Orthogroups_2024-Update
Potri.005G207700	No alias	auxin response factor 8	0.01	Orthogroups_2024-Update
Pp1s119_32V6	No alias	auxin response	0.01	Orthogroups_2024-Update
Pp1s64_138V6	No alias	arf1-binding protein	0.01	Orthogroups_2024-Update
Seita.1G195500.1	No alias	ARF-type transcription factor	0.02	Orthogroups_2024-Update
Seita.3G020000.1	No alias	ARF-type transcription factor	0.08	Orthogroups_2024-Update
Seita.3G147000.1	No alias	ARF-type transcription factor	0.02	Orthogroups_2024-Update
Seita.5G438100.1	No alias	ARF-type transcription factor	0.02	Orthogroups_2024-Update
Seita.7G108100.1	No alias	ARF-type transcription factor	0.02	Orthogroups_2024-Update
Seita.7G169600.1	No alias	ARF-type transcription factor	0.03	Orthogroups_2024-Update
Seita.8G135700.1	No alias	ARF-type transcription factor	0.02	Orthogroups_2024-Update
Sobic.002G290600.1	No alias	ARF-type transcription factor	0.01	Orthogroups_2024-Update
Sobic.009G231800.1	No alias	ARF-type transcription factor	0.02	Orthogroups_2024-Update
Solyc01g096070	No alias	Auxin Response Factor 18	0.01	Orthogroups_2024-Update
Solyc03g031970	No alias	Auxin response factor (AHRD V3.3 *** A0A191T8S7_SALMI)	0.02	Orthogroups_2024-Update
Solyc05g047460	No alias	Auxin Response Factor 7B	0.01	Orthogroups_2024-Update
Solyc07g043620	No alias	Auxin Response Factor 6B	0.01	Orthogroups_2024-Update
Solyc08g082630	No alias	Auxin Response Factor 9A	0.01	Orthogroups_2024-Update
Sopen02g022450	No alias	Auxin response factor	0.01	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	16Dec
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IEA	16Dec
BP	GO:0006355	regulation of transcription, DNA-templated	IEA	16Dec
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009719	response to endogenous stimulus	None	Extended
BP	GO:0009725	response to hormone	IEA	16Dec
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010033	response to organic substance	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0042221	response to chemical	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR003340	B3_DNA-bd	127	228
IPR010525	Auxin_resp	253	335
IPR033389	AUX/IAA_dom	936	1025

External Links

No external refs found!

Sobic.010G073600.1

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation