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  5. Sobic.010G078900.1

Sobic.010G078900.1


Description : component *(SPT5) of SPT4/5 transcription elongation factor complex


Gene families : OG_42_0003156 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0003156_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor: Sobic.010G078900.1
Cluster HCAA Clusters: Cluster_76

Target Alias Description ECC score Gene Family Method Actions
Cre01.g031050 No alias global transcription factor group A2 0.01 Orthogroups_2024-Update
Glyma.06G122500 No alias global transcription factor group A2 0.04 Orthogroups_2024-Update
MA_10434986g0010 No alias (at4g08350 : 1091.0) global transcription factor group... 0.02 Orthogroups_2024-Update
evm.model.tig00001094.2 No alias (at4g08350 : 167.0) global transcription factor group A2... 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0006397 mRNA processing IEP Predicted GO
BP GO:0006606 protein import into nucleus IEP Predicted GO
BP GO:0006886 intracellular protein transport IEP Predicted GO
BP GO:0006913 nucleocytoplasmic transport IEP Predicted GO
BP GO:0016071 mRNA metabolic process IEP Predicted GO
BP GO:0017038 protein import IEP Predicted GO
BP GO:0033365 protein localization to organelle IEP Predicted GO
BP GO:0034504 protein localization to nucleus IEP Predicted GO
BP GO:0034613 cellular protein localization IEP Predicted GO
BP GO:0051169 nuclear transport IEP Predicted GO
BP GO:0051170 import into nucleus IEP Predicted GO
BP GO:0070727 cellular macromolecule localization IEP Predicted GO
BP GO:0072594 establishment of protein localization to organelle IEP Predicted GO
InterPro domains Description Start Stop
IPR005824 KOW 491 518
IPR005100 NGN-domain 195 276
IPR022581 Spt5_N 102 189
No external refs found!