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  5. Sobic.010G092801.1

Sobic.010G092801.1


Description : RNA editing factor *(MEF9) & RKD-type transcription factor & germ cell differentiation factor *(RKD)


Gene families : OG_42_0007791 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0007791_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor: Sobic.010G092801.1
Cluster HCAA Clusters: Cluster_13

Target Alias Description ECC score Gene Family Method Actions
Solyc05g006460 No alias Pentatricopeptide repeat-containing protein, putative... 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0004252 serine-type endopeptidase activity IEP Predicted GO
MF GO:0004499 N,N-dimethylaniline monooxygenase activity IEP Predicted GO
MF GO:0005216 ion channel activity IEP Predicted GO
MF GO:0015276 ligand-gated ion channel activity IEP Predicted GO
MF GO:0016709 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen IEP Predicted GO
MF GO:0022834 ligand-gated channel activity IEP Predicted GO
MF GO:0022836 gated channel activity IEP Predicted GO
MF GO:0022838 substrate-specific channel activity IEP Predicted GO
MF GO:0022839 ion gated channel activity IEP Predicted GO
MF GO:0050661 NADP binding IEP Predicted GO
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 339 386
IPR002885 Pentatricopeptide_repeat 439 486
IPR002885 Pentatricopeptide_repeat 137 163
IPR002885 Pentatricopeptide_repeat 248 274
IPR002885 Pentatricopeptide_repeat 105 133
IPR002885 Pentatricopeptide_repeat 515 538
IPR002885 Pentatricopeptide_repeat 40 69
IPR002885 Pentatricopeptide_repeat 169 189
IPR002885 Pentatricopeptide_repeat 279 303
IPR002885 Pentatricopeptide_repeat 413 436
IPR002885 Pentatricopeptide_repeat 204 227
IPR002885 Pentatricopeptide_repeat 310 337
IPR003035 RWP-RK_dom 767 814
No external refs found!