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  5. Sobic.010G097700.1

Sobic.010G097700.1


Description : Unknown function


Gene families : OG_42_0000001 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor: Sobic.010G097700.1
Cluster HCAA Clusters: Cluster_53

Target Alias Description ECC score Gene Family Method Actions
At1g77170 No alias Pentatricopeptide repeat-containing protein At1g77170,... 0.04 Orthogroups_2024-Update
At2g17210 No alias Pentatricopeptide repeat-containing protein At2g17210... 0.03 Orthogroups_2024-Update
At4g38010 No alias Pentatricopeptide repeat-containing protein At4g38010... 0.03 Orthogroups_2024-Update
At5g48910 No alias Pentatricopeptide repeat-containing protein At5g48910... 0.05 Orthogroups_2024-Update
Bradi1g56040 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
Bradi4g40340 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 Orthogroups_2024-Update
Brara.A00314.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Brara.E02742.1 No alias Unknown function 0.06 Orthogroups_2024-Update
Brara.E03381.1 No alias RNA editing factor *(MEF19) 0.04 Orthogroups_2024-Update
Glyma.07G068600 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.04 Orthogroups_2024-Update
Glyma.08G141600 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
Glyma.08G213800 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
HORVU3Hr1G079860.2 No alias Unknown function 0.03 Orthogroups_2024-Update
PSME_00001413-RA No alias (at4g18750 : 525.0) Encodes a pentatricopeptide (PPR)... 0.04 Orthogroups_2024-Update
PSME_00021863-RA No alias (at2g22070 : 612.0) pentatricopeptide (PPR)... 0.05 Orthogroups_2024-Update
PSME_00024026-RA No alias (at4g20770 : 565.0) Pentatricopeptide repeat (PPR)... 0.04 Orthogroups_2024-Update
PSME_00042924-RA No alias (at3g57430 : 662.0) Encodes a chloroplast RNA editing... 0.03 Orthogroups_2024-Update
PSME_00046485-RA No alias (at4g18750 : 683.0) Encodes a pentatricopeptide (PPR)... 0.03 Orthogroups_2024-Update
PSME_00047047-RA No alias (at1g11290 : 654.0) Pentatricopeptide Repeat Protein... 0.03 Orthogroups_2024-Update
PSME_00048766-RA No alias (at4g02750 : 577.0) Tetratricopeptide repeat (TPR)-like... 0.06 Orthogroups_2024-Update
Seita.1G102000.1 No alias Unknown function 0.06 Orthogroups_2024-Update
Seita.1G215700.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Seita.9G213100.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.002G403500.3 No alias Unknown function 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA 16Dec
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Type GO Term Name Evidence Source
MF GO:0004345 glucose-6-phosphate dehydrogenase activity IEP Predicted GO
CC GO:0005730 nucleolus IEP Predicted GO
BP GO:0005996 monosaccharide metabolic process IEP Predicted GO
BP GO:0006006 glucose metabolic process IEP Predicted GO
BP GO:0006364 rRNA processing IEP Predicted GO
BP GO:0016072 rRNA metabolic process IEP Predicted GO
MF GO:0016614 oxidoreductase activity, acting on CH-OH group of donors IEP Predicted GO
MF GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor IEP Predicted GO
BP GO:0019318 hexose metabolic process IEP Predicted GO
MF GO:0030515 snoRNA binding IEP Predicted GO
BP GO:0034470 ncRNA processing IEP Predicted GO
MF GO:0034511 U3 snoRNA binding IEP Predicted GO
CC GO:0044428 nuclear part IEP Predicted GO
MF GO:0050661 NADP binding IEP Predicted GO
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 317 345
IPR002885 Pentatricopeptide_repeat 114 143
IPR002885 Pentatricopeptide_repeat 86 112
IPR002885 Pentatricopeptide_repeat 289 308
IPR002885 Pentatricopeptide_repeat 389 413
IPR002885 Pentatricopeptide_repeat 215 244
IPR032867 DYW_dom 731 823
IPR002885 Pentatricopeptide_repeat 516 562
IPR002885 Pentatricopeptide_repeat 415 463
No external refs found!