Description : mRNA-binding adaptor ALY/Tho4 of TREX/THO mRNP trafficking complex
Gene families : OG_42_0001005 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001005_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | Sorghum bicolor: Sobic.010G105600.1 | |
Cluster | HCAA Clusters: Cluster_180 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
At5g59950 | No alias | RNA-binding (RRM/RBD/RNP motifs) family protein... | 0.02 | Orthogroups_2024-Update | |
Glyma.13G334200 | No alias | RNA-binding (RRM/RBD/RNP motifs) family protein | 0.03 | Orthogroups_2024-Update | |
evm.model.contig_3435.12 | No alias | no hits & (original description: no original description) | 0.02 | Orthogroups_2024-Update |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0003723 | RNA binding | IEA | 16Dec |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0001882 | nucleoside binding | IEP | Predicted GO |
MF | GO:0001883 | purine nucleoside binding | IEP | Predicted GO |
MF | GO:0004842 | ubiquitin-protein transferase activity | IEP | Predicted GO |
MF | GO:0005048 | signal sequence binding | IEP | Predicted GO |
MF | GO:0005525 | GTP binding | IEP | Predicted GO |
CC | GO:0005778 | peroxisomal membrane | IEP | Predicted GO |
BP | GO:0006621 | protein retention in ER lumen | IEP | Predicted GO |
BP | GO:0007034 | vacuolar transport | IEP | Predicted GO |
MF | GO:0008121 | ubiquinol-cytochrome-c reductase activity | IEP | Predicted GO |
BP | GO:0016559 | peroxisome fission | IEP | Predicted GO |
BP | GO:0016567 | protein ubiquitination | IEP | Predicted GO |
MF | GO:0016679 | oxidoreductase activity, acting on diphenols and related substances as donors | IEP | Predicted GO |
MF | GO:0016681 | oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor | IEP | Predicted GO |
MF | GO:0019001 | guanyl nucleotide binding | IEP | Predicted GO |
MF | GO:0019787 | ubiquitin-like protein transferase activity | IEP | Predicted GO |
CC | GO:0031090 | organelle membrane | IEP | Predicted GO |
CC | GO:0031903 | microbody membrane | IEP | Predicted GO |
BP | GO:0032446 | protein modification by small protein conjugation | IEP | Predicted GO |
BP | GO:0032507 | maintenance of protein location in cell | IEP | Predicted GO |
MF | GO:0032549 | ribonucleoside binding | IEP | Predicted GO |
MF | GO:0032550 | purine ribonucleoside binding | IEP | Predicted GO |
MF | GO:0032561 | guanyl ribonucleotide binding | IEP | Predicted GO |
MF | GO:0033218 | amide binding | IEP | Predicted GO |
BP | GO:0035437 | maintenance of protein localization in endoplasmic reticulum | IEP | Predicted GO |
MF | GO:0042277 | peptide binding | IEP | Predicted GO |
CC | GO:0042579 | microbody | IEP | Predicted GO |
CC | GO:0044438 | microbody part | IEP | Predicted GO |
CC | GO:0044439 | peroxisomal part | IEP | Predicted GO |
BP | GO:0045185 | maintenance of protein location | IEP | Predicted GO |
MF | GO:0046923 | ER retention sequence binding | IEP | Predicted GO |
BP | GO:0048285 | organelle fission | IEP | Predicted GO |
BP | GO:0051179 | localization | IEP | Predicted GO |
BP | GO:0051235 | maintenance of location | IEP | Predicted GO |
MF | GO:0051537 | 2 iron, 2 sulfur cluster binding | IEP | Predicted GO |
BP | GO:0051651 | maintenance of location in cell | IEP | Predicted GO |
BP | GO:0070647 | protein modification by small protein conjugation or removal | IEP | Predicted GO |
BP | GO:0072595 | maintenance of protein localization in organelle | IEP | Predicted GO |
CC | GO:0098588 | bounding membrane of organelle | IEP | Predicted GO |
CC | GO:0098805 | whole membrane | IEP | Predicted GO |
InterPro domains | Description | Start | Stop |
---|---|---|---|
IPR000504 | RRM_dom | 110 | 178 |
No external refs found! |