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  5. Sobic.010G112100.1

Sobic.010G112100.1


Description : histone demethylase *(PKDM7)


Gene families : OG_42_0001408 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001408_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor: Sobic.010G112100.1
Cluster HCAA Clusters: Cluster_167

Target Alias Description ECC score Gene Family Method Actions
Bradi2g14600 No alias Transcription factor jumonji (jmj) family protein / zinc... 0.07 Orthogroups_2024-Update
Seita.4G119000.1 No alias histone demethylase *(PKDM7) 0.04 Orthogroups_2024-Update
evm.model.contig_612.1 No alias (at2g34880 : 224.0) maternal effect embryo arrest 27... 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
CC GO:0005634 nucleus IEA 16Dec
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Type GO Term Name Evidence Source
MF GO:0004175 endopeptidase activity IEP Predicted GO
MF GO:0004190 aspartic-type endopeptidase activity IEP Predicted GO
MF GO:0004222 metalloendopeptidase activity IEP Predicted GO
MF GO:0005524 ATP binding IEP Predicted GO
BP GO:0007155 cell adhesion IEP Predicted GO
MF GO:0008144 drug binding IEP Predicted GO
MF GO:0008233 peptidase activity IEP Predicted GO
MF GO:0008237 metallopeptidase activity IEP Predicted GO
BP GO:0022610 biological adhesion IEP Predicted GO
MF GO:0030554 adenyl nucleotide binding IEP Predicted GO
MF GO:0032559 adenyl ribonucleotide binding IEP Predicted GO
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Predicted GO
MF GO:0042393 histone binding IEP Predicted GO
MF GO:0042910 xenobiotic transmembrane transporter activity IEP Predicted GO
MF GO:0070001 aspartic-type peptidase activity IEP Predicted GO
MF GO:0070011 peptidase activity, acting on L-amino acid peptides IEP Predicted GO
InterPro domains Description Start Stop
IPR003347 JmjC_dom 384 500
IPR003888 FYrich_N 1043 1086
IPR004198 Znf_C5HC2 606 656
IPR003889 FYrich_C 1093 1181
IPR003349 JmjN 160 193
No external refs found!