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Description : cohesin cofactor *(PDS5)
Gene families : OG_42_0002777 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002777_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Sorghum bicolor: Sobic.010G121500.1 | |
| Cluster | HCAA Clusters: Cluster_254 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| Bradi1g43440 | No alias | binding | 0.05 | Orthogroups_2024-Update | |
| GRMZM2G010637 | No alias | binding | 0.05 | Orthogroups_2024-Update | |
| Glyma.07G268200 | No alias | binding | 0.05 | Orthogroups_2024-Update | |
| Glyma.09G014600 | No alias | binding | 0.07 | Orthogroups_2024-Update | |
| Glyma.15G120300 | No alias | binding | 0.04 | Orthogroups_2024-Update | |
| Glyma.17G005500 | No alias | binding | 0.06 | Orthogroups_2024-Update | |
| Kfl00602_0050 | kfl00602_0050_v1.1 | (at5g47690 : 585.0) binding; FUNCTIONS IN: binding;... | 0.02 | Orthogroups_2024-Update | |
| Seita.4G126200.1 | No alias | cohesin cofactor *(PDS5) | 0.06 | Orthogroups_2024-Update | |
| Sopen11g007510 | No alias | hypothetical protein | 0.03 | Orthogroups_2024-Update | |
| evm.model.contig_2015.14 | No alias | (at1g77600 : 108.0) ARM repeat superfamily protein;... | 0.02 | Orthogroups_2024-Update |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003674 | molecular_function | IEP | Predicted GO |
| MF | GO:0003676 | nucleic acid binding | IEP | Predicted GO |
| MF | GO:0003723 | RNA binding | IEP | Predicted GO |
| MF | GO:0003729 | mRNA binding | IEP | Predicted GO |
| MF | GO:0004527 | exonuclease activity | IEP | Predicted GO |
| MF | GO:0004842 | ubiquitin-protein transferase activity | IEP | Predicted GO |
| MF | GO:0004843 | thiol-dependent ubiquitin-specific protease activity | IEP | Predicted GO |
| MF | GO:0005484 | SNAP receptor activity | IEP | Predicted GO |
| MF | GO:0005488 | binding | IEP | Predicted GO |
| MF | GO:0005515 | protein binding | IEP | Predicted GO |
| CC | GO:0005643 | nuclear pore | IEP | Predicted GO |
| CC | GO:0005685 | U1 snRNP | IEP | Predicted GO |
| BP | GO:0006376 | mRNA splice site selection | IEP | Predicted GO |
| BP | GO:0006508 | proteolysis | IEP | Predicted GO |
| BP | GO:0006890 | retrograde vesicle-mediated transport, Golgi to ER | IEP | Predicted GO |
| BP | GO:0006913 | nucleocytoplasmic transport | IEP | Predicted GO |
| MF | GO:0008233 | peptidase activity | IEP | Predicted GO |
| MF | GO:0008234 | cysteine-type peptidase activity | IEP | Predicted GO |
| BP | GO:0016579 | protein deubiquitination | IEP | Predicted GO |
| MF | GO:0017056 | structural constituent of nuclear pore | IEP | Predicted GO |
| MF | GO:0019783 | ubiquitin-like protein-specific protease activity | IEP | Predicted GO |
| MF | GO:0019787 | ubiquitin-like protein transferase activity | IEP | Predicted GO |
| BP | GO:0022618 | ribonucleoprotein complex assembly | IEP | Predicted GO |
| CC | GO:0030532 | small nuclear ribonucleoprotein complex | IEP | Predicted GO |
| MF | GO:0030554 | adenyl nucleotide binding | IEP | Predicted GO |
| MF | GO:0031267 | small GTPase binding | IEP | Predicted GO |
| MF | GO:0032559 | adenyl ribonucleotide binding | IEP | Predicted GO |
| CC | GO:0035145 | exon-exon junction complex | IEP | Predicted GO |
| MF | GO:0036459 | thiol-dependent ubiquitinyl hydrolase activity | IEP | Predicted GO |
| CC | GO:0044422 | organelle part | IEP | Predicted GO |
| CC | GO:0044428 | nuclear part | IEP | Predicted GO |
| CC | GO:0044446 | intracellular organelle part | IEP | Predicted GO |
| BP | GO:0046907 | intracellular transport | IEP | Predicted GO |
| BP | GO:0048193 | Golgi vesicle transport | IEP | Predicted GO |
| MF | GO:0051020 | GTPase binding | IEP | Predicted GO |
| BP | GO:0051169 | nuclear transport | IEP | Predicted GO |
| BP | GO:0051641 | cellular localization | IEP | Predicted GO |
| BP | GO:0051649 | establishment of localization in cell | IEP | Predicted GO |
| MF | GO:0070011 | peptidase activity, acting on L-amino acid peptides | IEP | Predicted GO |
| BP | GO:0070646 | protein modification by small protein removal | IEP | Predicted GO |
| BP | GO:0070647 | protein modification by small protein conjugation or removal | IEP | Predicted GO |
| BP | GO:0071826 | ribonucleoprotein complex subunit organization | IEP | Predicted GO |
| MF | GO:0097159 | organic cyclic compound binding | IEP | Predicted GO |
| CC | GO:0097525 | spliceosomal snRNP complex | IEP | Predicted GO |
| MF | GO:0101005 | ubiquitinyl hydrolase activity | IEP | Predicted GO |
| CC | GO:0120114 | Sm-like protein family complex | IEP | Predicted GO |
| MF | GO:0140096 | catalytic activity, acting on a protein | IEP | Predicted GO |
| MF | GO:1901363 | heterocyclic compound binding | IEP | Predicted GO |
No InterPro domains available for this sequence
| No external refs found! |