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  5. Sobic.010G132400.1

Sobic.010G132400.1


Description : EC_3.2 glycosylase


Gene families : OG_42_0000033 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000033_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor: Sobic.010G132400.1
Cluster HCAA Clusters: Cluster_200

Target Alias Description ECC score Gene Family Method Actions
Bradi3g45607 No alias beta glucosidase 11 0.03 Orthogroups_2024-Update
Bradi3g45627 No alias beta glucosidase 11 0.03 Orthogroups_2024-Update
Bradi3g45636 No alias beta glucosidase 11 0.03 Orthogroups_2024-Update
GRMZM2G077015 No alias beta glucosidase 15 0.03 Orthogroups_2024-Update
Glyma.11G129700 No alias beta glucosidase 13 0.03 Orthogroups_2024-Update
Glyma.11G129800 No alias beta glucosidase 13 0.03 Orthogroups_2024-Update
LOC_Os03g49610 No alias Os3bglu8 - beta-glucosidase, exo-beta-glucansase, high... 0.02 Orthogroups_2024-Update
Sobic.001G123100.1 No alias beta-glucosidase involved in pollen intine formation &... 0.02 Orthogroups_2024-Update
Sopen03g037970 No alias Glycosyl hydrolase family 1 0.02 Orthogroups_2024-Update
evm.model.tig00022075.83 No alias (at1g26560 : 189.0) beta glucosidase 40 (BGLU40);... 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEA 16Dec
BP GO:0005975 carbohydrate metabolic process IEA 16Dec
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Type GO Term Name Evidence Source
BP GO:0000375 RNA splicing, via transesterification reactions IEP Predicted GO
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP Predicted GO
BP GO:0000398 mRNA splicing, via spliceosome IEP Predicted GO
CC GO:0005681 spliceosomal complex IEP Predicted GO
BP GO:0006397 mRNA processing IEP Predicted GO
BP GO:0006811 ion transport IEP Predicted GO
BP GO:0006812 cation transport IEP Predicted GO
BP GO:0006813 potassium ion transport IEP Predicted GO
MF GO:0008324 cation transmembrane transporter activity IEP Predicted GO
BP GO:0008380 RNA splicing IEP Predicted GO
MF GO:0015075 ion transmembrane transporter activity IEP Predicted GO
MF GO:0015079 potassium ion transmembrane transporter activity IEP Predicted GO
MF GO:0015318 inorganic molecular entity transmembrane transporter activity IEP Predicted GO
BP GO:0016071 mRNA metabolic process IEP Predicted GO
MF GO:0022890 inorganic cation transmembrane transporter activity IEP Predicted GO
BP GO:0030001 metal ion transport IEP Predicted GO
MF GO:0046873 metal ion transmembrane transporter activity IEP Predicted GO
BP GO:0071805 potassium ion transmembrane transport IEP Predicted GO
InterPro domains Description Start Stop
IPR001360 Glyco_hydro_1 29 502
No external refs found!