Sobic.010G173400.1


Description : transcription factor *(A/B-GATA)


Gene families : OG_42_0000071 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000071_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor: Sobic.010G173400.1
Cluster HCAA Clusters: Cluster_42

Target Alias Description ECC score Gene Family Method Actions
Brara.A01938.1 No alias transcription factor *(A/B-GATA) 0.02 Orthogroups_2024-Update
Brara.C04478.1 No alias transcription factor *(A/B-GATA) 0.03 Orthogroups_2024-Update
Brara.K00158.1 No alias transcription factor *(A/B-GATA) 0.04 Orthogroups_2024-Update
HORVU6Hr1G039720.5 No alias transcription factor *(A/B-GATA) 0.02 Orthogroups_2024-Update
Seita.7G267900.1 No alias transcription factor *(A/B-GATA) 0.04 Orthogroups_2024-Update
evm.model.tig00020610.74 No alias no hits & (original description: no original description) 0.01 Orthogroups_2024-Update

Type GO Term Name Evidence Source
BP GO:0006355 regulation of transcription, DNA-templated IEA 16Dec
MF GO:0043565 sequence-specific DNA binding IEA 16Dec
Type GO Term Name Evidence Source
BP GO:0000154 rRNA modification IEP Predicted GO
BP GO:0001510 RNA methylation IEP Predicted GO
MF GO:0003777 microtubule motor activity IEP Predicted GO
MF GO:0005515 protein binding IEP Predicted GO
MF GO:0005524 ATP binding IEP Predicted GO
BP GO:0006364 rRNA processing IEP Predicted GO
BP GO:0006928 movement of cell or subcellular component IEP Predicted GO
BP GO:0007018 microtubule-based movement IEP Predicted GO
MF GO:0008144 drug binding IEP Predicted GO
MF GO:0008173 RNA methyltransferase activity IEP Predicted GO
MF GO:0008649 rRNA methyltransferase activity IEP Predicted GO
MF GO:0008757 S-adenosylmethionine-dependent methyltransferase activity IEP Predicted GO
BP GO:0009439 cyanate metabolic process IEP Predicted GO
BP GO:0009451 RNA modification IEP Predicted GO
BP GO:0009987 cellular process IEP Predicted GO
BP GO:0010024 phytochromobilin biosynthetic process IEP Predicted GO
BP GO:0010215 cellulose microfibril organization IEP Predicted GO
BP GO:0016072 rRNA metabolic process IEP Predicted GO
MF GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors IEP Predicted GO
MF GO:0016636 oxidoreductase activity, acting on the CH-CH group of donors, iron-sulfur protein as acceptor IEP Predicted GO
BP GO:0030198 extracellular matrix organization IEP Predicted GO
BP GO:0031167 rRNA methylation IEP Predicted GO
BP GO:0032259 methylation IEP Predicted GO
BP GO:0033013 tetrapyrrole metabolic process IEP Predicted GO
BP GO:0033014 tetrapyrrole biosynthetic process IEP Predicted GO
BP GO:0034641 cellular nitrogen compound metabolic process IEP Predicted GO
BP GO:0043062 extracellular structure organization IEP Predicted GO
BP GO:0043414 macromolecule methylation IEP Predicted GO
MF GO:0046983 protein dimerization activity IEP Predicted GO
MF GO:0050897 cobalt ion binding IEP Predicted GO
BP GO:0051202 phytochromobilin metabolic process IEP Predicted GO
MF GO:0070037 rRNA (pseudouridine) methyltransferase activity IEP Predicted GO
BP GO:0070475 rRNA base methylation IEP Predicted GO
MF GO:0140102 catalytic activity, acting on a rRNA IEP Predicted GO
InterPro domains Description Start Stop
IPR000679 Znf_GATA 190 223
No external refs found!