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  5. Sobic.010G176800.1

Sobic.010G176800.1


Description : subfamily ABCA transporter


Gene families : OG_42_0000851 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000851_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor: Sobic.010G176800.1
Cluster HCAA Clusters: Cluster_78

Target Alias Description ECC score Gene Family Method Actions
At3g47740 No alias ABC transporter A family member 3... 0.03 Orthogroups_2024-Update
GRMZM5G886326 No alias ABC2 homolog 16 0.02 Orthogroups_2024-Update
Glyma.06G191400 No alias ABC2 homolog 6 0.03 Orthogroups_2024-Update
Mp7g18420.1 No alias subfamily ABCA transporter 0.02 Orthogroups_2024-Update
Seita.1G039200.1 No alias subfamily ABCA transporter 0.03 Orthogroups_2024-Update
Seita.1G039400.1 No alias subfamily ABCA transporter 0.06 Orthogroups_2024-Update
Seita.6G136400.1 No alias subfamily ABCA transporter 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA 16Dec
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Type GO Term Name Evidence Source
MF GO:0005509 calcium ion binding IEP Predicted GO
MF GO:0005515 protein binding IEP Predicted GO
CC GO:0005839 proteasome core complex IEP Predicted GO
BP GO:0019538 protein metabolic process IEP Predicted GO
CC GO:0032991 protein-containing complex IEP Predicted GO
MF GO:0043169 cation binding IEP Predicted GO
MF GO:0046872 metal ion binding IEP Predicted GO
BP GO:0051603 proteolysis involved in cellular protein catabolic process IEP Predicted GO
BP GO:1901564 organonitrogen compound metabolic process IEP Predicted GO
InterPro domains Description Start Stop
IPR003439 ABC_transporter-like 654 798
No external refs found!