1. Home
  2. Species
  3. Sorghum bicolor
  4. Sequence
  5. Sobic.010G182100.1

Sobic.010G182100.1


Description : aminoacyl-tRNA binding factor *(eEF1A))


Gene families : OG_42_0000485 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000485_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor: Sobic.010G182100.1
Cluster HCAA Clusters: Cluster_24

Target Alias Description ECC score Gene Family Method Actions
169717 No alias GTP binding Elongation factor Tu family protein 0.15 Orthogroups_2024-Update
171512 No alias GTP binding Elongation factor Tu family protein 0.19 Orthogroups_2024-Update
270693 No alias GTP binding Elongation factor Tu family protein 0.03 Orthogroups_2024-Update
AC233866.1_FG006 No alias GTP binding Elongation factor Tu family protein 0.12 Orthogroups_2024-Update
At5g60390 No alias Elongation factor 1-alpha 4... 0.03 Orthogroups_2024-Update
Bradi0012s00100 No alias GTP binding Elongation factor Tu family protein 0.26 Orthogroups_2024-Update
Bradi1g06851 No alias GTP binding Elongation factor Tu family protein 0.24 Orthogroups_2024-Update
Bradi1g06861 No alias GTP binding Elongation factor Tu family protein 0.17 Orthogroups_2024-Update
Bradi1g06870 No alias GTP binding Elongation factor Tu family protein 0.26 Orthogroups_2024-Update
Bradi1g65725 No alias GTP binding Elongation factor Tu family protein 0.16 Orthogroups_2024-Update
Bradi4g12750 No alias GTP binding Elongation factor Tu family protein 0.06 Orthogroups_2024-Update
Brara.B01038.1 No alias aminoacyl-tRNA binding factor *(eEF1A)) 0.32 Orthogroups_2024-Update
Brara.B01040.1 No alias aminoacyl-tRNA binding factor *(eEF1A)) 0.31 Orthogroups_2024-Update
Brara.C01040.1 No alias aminoacyl-tRNA binding factor *(eEF1A)) 0.34 Orthogroups_2024-Update
Brara.E01218.1 No alias aminoacyl-tRNA binding factor *(eEF1A)) 0.08 Orthogroups_2024-Update
Brara.H02895.1 No alias aminoacyl-tRNA binding factor *(eEF1A)) 0.14 Orthogroups_2024-Update
Brara.I05331.1 No alias aminoacyl-tRNA binding factor *(eEF1A)) 0.09 Orthogroups_2024-Update
Brara.J01398.1 No alias aminoacyl-tRNA binding factor *(eEF1A)) 0.16 Orthogroups_2024-Update
GRMZM2G001327 No alias GTP binding Elongation factor Tu family protein 0.13 Orthogroups_2024-Update
GRMZM2G057535 No alias GTP binding Elongation factor Tu family protein 0.05 Orthogroups_2024-Update
GRMZM2G110509 No alias GTP binding Elongation factor Tu family protein 0.06 Orthogroups_2024-Update
GRMZM2G149768 No alias GTP binding Elongation factor Tu family protein 0.14 Orthogroups_2024-Update
GRMZM2G151193 No alias GTP binding Elongation factor Tu family protein 0.18 Orthogroups_2024-Update
GRMZM2G153541 No alias GTP binding Elongation factor Tu family protein 0.09 Orthogroups_2024-Update
GRMZM2G343543 No alias GTP binding Elongation factor Tu family protein 0.09 Orthogroups_2024-Update
Glyma.05G089000 No alias GTP binding Elongation factor Tu family protein 0.11 Orthogroups_2024-Update
Glyma.05G114900 No alias GTP binding Elongation factor Tu family protein 0.14 Orthogroups_2024-Update
Glyma.17G186600 No alias GTP binding Elongation factor Tu family protein 0.04 Orthogroups_2024-Update
Glyma.19G052400 No alias GTP binding Elongation factor Tu family protein 0.1 Orthogroups_2024-Update
HORVU0Hr1G017020.1 No alias aminoacyl-tRNA binding factor *(eEF1A)) 0.12 Orthogroups_2024-Update
HORVU2Hr1G013680.1 No alias aminoacyl-tRNA binding factor *(eEF1A)) 0.06 Orthogroups_2024-Update
HORVU4Hr1G056740.5 No alias aminoacyl-tRNA binding factor *(eEF1A)) 0.08 Orthogroups_2024-Update
HORVU4Hr1G056820.1 No alias aminoacyl-tRNA binding factor *(eEF1A)) 0.04 Orthogroups_2024-Update
HORVU4Hr1G056830.1 No alias aminoacyl-tRNA binding factor *(eEF1A)) 0.07 Orthogroups_2024-Update
HORVU5Hr1G100200.3 No alias aminoacyl-tRNA binding factor *(eEF1A)) 0.11 Orthogroups_2024-Update
HORVU5Hr1G100700.3 No alias aminoacyl-tRNA binding factor *(eEF1A)) 0.09 Orthogroups_2024-Update
Kfl00046_0250 kfl00046_0250_v1.1 (o24534|ef1a_vicfa : 816.0) Elongation factor 1-alpha... 0.03 Orthogroups_2024-Update
Mp3g23400.1 No alias aminoacyl-tRNA binding factor (eEF1A) 0.09 Orthogroups_2024-Update
PSME_00035389-RA No alias (p34823|ef1a2_dauca : 304.0) Elongation factor 1-alpha... 0.03 Orthogroups_2024-Update
Pp1s59_161V6 No alias elongation factor 1- 0.05 Orthogroups_2024-Update
Pp1s59_167V6 No alias elongation factor 1- 0.02 Orthogroups_2024-Update
Pp1s59_181V6 No alias elongation factor 1- 0.07 Orthogroups_2024-Update
Pp1s7_445V6 No alias elongation factor 1- 0.03 Orthogroups_2024-Update
Seita.3G265400.1 No alias aminoacyl-tRNA binding factor *(eEF1A)) 0.13 Orthogroups_2024-Update
Seita.3G265500.1 No alias aminoacyl-tRNA binding factor *(eEF1A)) 0.06 Orthogroups_2024-Update
Seita.3G265600.1 No alias aminoacyl-tRNA binding factor *(eEF1A)) 0.09 Orthogroups_2024-Update
Seita.3G265700.1 No alias aminoacyl-tRNA binding factor *(eEF1A)) 0.13 Orthogroups_2024-Update
Seita.3G265900.1 No alias aminoacyl-tRNA binding factor *(eEF1A)) 0.07 Orthogroups_2024-Update
Seita.9G442900.1 No alias aminoacyl-tRNA binding factor *(eEF1A)) 0.1 Orthogroups_2024-Update
Seita.9G443000.1 No alias aminoacyl-tRNA binding factor *(eEF1A)) 0.1 Orthogroups_2024-Update
Solyc06g005060 No alias elongation factor 1-alpha 0.21 Orthogroups_2024-Update
Solyc06g009960 No alias Elongation factor 1-alpha (AHRD V3.3 *-* EF1A_SOLLC) 0.09 Orthogroups_2024-Update
Solyc06g009970 No alias Elongation factor 1-alpha (AHRD V3.3 *** EF1A_SOLLC) 0.05 Orthogroups_2024-Update
Solyc11g069700 No alias Elongation factor 1-alpha (AHRD V3.3 *** EF1A_SOLLC) 0.03 Orthogroups_2024-Update
Sopen06g004650 No alias Elongation factor Tu GTP binding domain 0.41 Orthogroups_2024-Update
Sopen11g027830 No alias Elongation factor Tu GTP binding domain 0.33 Orthogroups_2024-Update
evm.model.contig_509.2 No alias (p25698|ef1a_soybn : 335.0) Elongation factor 1-alpha... 0.42 Orthogroups_2024-Update
evm.model.tig00021352.57 No alias (o64937|ef1a_orysa : 717.0) Elongation factor 1-alpha... 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003924 GTPase activity IEA 16Dec
MF GO:0005525 GTP binding IEA 16Dec
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Predicted GO
MF GO:0003723 RNA binding IEP Predicted GO
MF GO:0003735 structural constituent of ribosome IEP Predicted GO
MF GO:0003746 translation elongation factor activity IEP Predicted GO
MF GO:0004576 oligosaccharyl transferase activity IEP Predicted GO
MF GO:0005198 structural molecule activity IEP Predicted GO
CC GO:0005575 cellular_component IEP Predicted GO
CC GO:0005744 TIM23 mitochondrial import inner membrane translocase complex IEP Predicted GO
CC GO:0005783 endoplasmic reticulum IEP Predicted GO
CC GO:0005840 ribosome IEP Predicted GO
BP GO:0006412 translation IEP Predicted GO
BP GO:0006414 translational elongation IEP Predicted GO
BP GO:0006518 peptide metabolic process IEP Predicted GO
BP GO:0006807 nitrogen compound metabolic process IEP Predicted GO
BP GO:0006839 mitochondrial transport IEP Predicted GO
MF GO:0008097 5S rRNA binding IEP Predicted GO
MF GO:0008135 translation factor activity, RNA binding IEP Predicted GO
BP GO:0008150 biological_process IEP Predicted GO
BP GO:0008152 metabolic process IEP Predicted GO
BP GO:0009058 biosynthetic process IEP Predicted GO
BP GO:0009059 macromolecule biosynthetic process IEP Predicted GO
BP GO:0009987 cellular process IEP Predicted GO
CC GO:0015934 large ribosomal subunit IEP Predicted GO
BP GO:0017038 protein import IEP Predicted GO
BP GO:0019538 protein metabolic process IEP Predicted GO
MF GO:0019843 rRNA binding IEP Predicted GO
BP GO:0030150 protein import into mitochondrial matrix IEP Predicted GO
CC GO:0032991 protein-containing complex IEP Predicted GO
BP GO:0034641 cellular nitrogen compound metabolic process IEP Predicted GO
BP GO:0034645 cellular macromolecule biosynthetic process IEP Predicted GO
BP GO:0043043 peptide biosynthetic process IEP Predicted GO
BP GO:0043170 macromolecule metabolic process IEP Predicted GO
CC GO:0043226 organelle IEP Predicted GO
CC GO:0043228 non-membrane-bounded organelle IEP Predicted GO
CC GO:0043229 intracellular organelle IEP Predicted GO
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Predicted GO
BP GO:0043603 cellular amide metabolic process IEP Predicted GO
BP GO:0043604 amide biosynthetic process IEP Predicted GO
BP GO:0044237 cellular metabolic process IEP Predicted GO
BP GO:0044238 primary metabolic process IEP Predicted GO
BP GO:0044249 cellular biosynthetic process IEP Predicted GO
BP GO:0044260 cellular macromolecule metabolic process IEP Predicted GO
BP GO:0044267 cellular protein metabolic process IEP Predicted GO
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Predicted GO
CC GO:0044391 ribosomal subunit IEP Predicted GO
CC GO:0044424 intracellular part IEP Predicted GO
CC GO:0044444 cytoplasmic part IEP Predicted GO
CC GO:0044464 cell part IEP Predicted GO
BP GO:0044743 protein transmembrane import into intracellular organelle IEP Predicted GO
BP GO:0065002 intracellular protein transmembrane transport IEP Predicted GO
BP GO:0070585 protein localization to mitochondrion IEP Predicted GO
BP GO:0071704 organic substance metabolic process IEP Predicted GO
BP GO:0071806 protein transmembrane transport IEP Predicted GO
BP GO:0072655 establishment of protein localization to mitochondrion IEP Predicted GO
BP GO:1901564 organonitrogen compound metabolic process IEP Predicted GO
BP GO:1901566 organonitrogen compound biosynthetic process IEP Predicted GO
BP GO:1901576 organic substance biosynthetic process IEP Predicted GO
BP GO:1990542 mitochondrial transmembrane transport IEP Predicted GO
CC GO:1990904 ribonucleoprotein complex IEP Predicted GO
InterPro domains Description Start Stop
IPR004160 Transl_elong_EFTu/EF1A_C 321 429
IPR000795 TF_GTP-bd_dom 5 221
IPR004161 EFTu-like_2 248 313
No external refs found!