1. Home
  2. Species
  3. Sorghum bicolor
  4. Sequence
  5. Sobic.010G193800.1

Sobic.010G193800.1


Description : regulatory protein *(KHZ) of autonomous floral-promotion pathway


Gene families : OG_42_0001307 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001307_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor: Sobic.010G193800.1
Cluster HCAA Clusters: Cluster_135

Target Alias Description ECC score Gene Family Method Actions
Potri.016G046600 No alias KH domain-containing protein / zinc finger (CCCH type)... 0.03 Orthogroups_2024-Update
Solyc01g073940 No alias Zinc finger transcription factor 9 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA 16Dec
MF GO:0046872 metal ion binding IEA 16Dec
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003743 translation initiation factor activity IEP Predicted GO
MF GO:0004175 endopeptidase activity IEP Predicted GO
MF GO:0004190 aspartic-type endopeptidase activity IEP Predicted GO
MF GO:0004386 helicase activity IEP Predicted GO
CC GO:0005575 cellular_component IEP Predicted GO
CC GO:0005852 eukaryotic translation initiation factor 3 complex IEP Predicted GO
BP GO:0006413 translational initiation IEP Predicted GO
MF GO:0008135 translation factor activity, RNA binding IEP Predicted GO
BP GO:0009892 negative regulation of metabolic process IEP Predicted GO
BP GO:0010605 negative regulation of macromolecule metabolic process IEP Predicted GO
BP GO:0010629 negative regulation of gene expression IEP Predicted GO
CC GO:0016020 membrane IEP Predicted GO
BP GO:0016458 gene silencing IEP Predicted GO
BP GO:0031047 gene silencing by RNA IEP Predicted GO
CC GO:0044444 cytoplasmic part IEP Predicted GO
BP GO:0048519 negative regulation of biological process IEP Predicted GO
MF GO:0070001 aspartic-type peptidase activity IEP Predicted GO
InterPro domains Description Start Stop
IPR000571 Znf_CCCH 273 298
IPR004088 KH_dom_type_1 175 238
No external refs found!