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  5. Sobic.010G205900.1

Sobic.010G205900.1


Description : SSU processome assembly factor *(UTP21)


Gene families : OG_42_0007155 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0007155_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor: Sobic.010G205900.1
Cluster HCAA Clusters: Cluster_66

Target Alias Description ECC score Gene Family Method Actions
78691 No alias transducin family protein / WD-40 repeat family protein 0.03 Orthogroups_2024-Update
At4g04940 No alias Putative WD-repeat membrane protein... 0.08 Orthogroups_2024-Update
Bradi1g30580 No alias transducin family protein / WD-40 repeat family protein 0.23 Orthogroups_2024-Update
Brara.C02742.1 No alias SSU processome assembly factor *(UTP21) 0.1 Orthogroups_2024-Update
Cre10.g466250 No alias transducin family protein / WD-40 repeat family protein 0.1 Orthogroups_2024-Update
GRMZM2G087712 No alias transducin family protein / WD-40 repeat family protein 0.02 Orthogroups_2024-Update
Glyma.01G001600 No alias transducin family protein / WD-40 repeat family protein 0.03 Orthogroups_2024-Update
HORVU7Hr1G115460.4 No alias SSU processome assembly factor *(UTP21) 0.04 Orthogroups_2024-Update
LOC_Os06g43690 No alias WD repeat-containing protein, putative, expressed 0.07 Orthogroups_2024-Update
Potri.006G078900 No alias transducin family protein / WD-40 repeat family protein 0.07 Orthogroups_2024-Update
Potri.018G148066 No alias transducin family protein / WD-40 repeat family protein 0.03 Orthogroups_2024-Update
Pp1s207_37V6 No alias mgc53182 protein 0.03 Orthogroups_2024-Update
Seita.4G201000.1 No alias SSU processome assembly factor *(UTP21) 0.22 Orthogroups_2024-Update
Solyc01g087670 No alias Transducin/WD40 repeat protein (AHRD V3.3 *** A0A072UCU5_MEDTR) 0.07 Orthogroups_2024-Update
Sopen01g034630 No alias Utp21 specific WD40 associated putative domain 0.07 Orthogroups_2024-Update
evm.model.contig_493.12 No alias (at4g04940 : 260.0) transducin family protein / WD-40... 0.03 Orthogroups_2024-Update
evm.model.tig00021348.51 No alias (at4g04940 : 484.0) transducin family protein / WD-40... 0.05 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA 16Dec
BP GO:0006364 rRNA processing IEA 16Dec
CC GO:0032040 small-subunit processome IEA 16Dec
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Type GO Term Name Evidence Source
BP GO:0001510 RNA methylation IEP Predicted GO
BP GO:0001522 pseudouridine synthesis IEP Predicted GO
MF GO:0003676 nucleic acid binding IEP Predicted GO
MF GO:0003697 single-stranded DNA binding IEP Predicted GO
MF GO:0003723 RNA binding IEP Predicted GO
MF GO:0003887 DNA-directed DNA polymerase activity IEP Predicted GO
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP Predicted GO
MF GO:0004809 tRNA (guanine-N2-)-methyltransferase activity IEP Predicted GO
MF GO:0004812 aminoacyl-tRNA ligase activity IEP Predicted GO
CC GO:0005634 nucleus IEP Predicted GO
CC GO:0005741 mitochondrial outer membrane IEP Predicted GO
CC GO:0005759 mitochondrial matrix IEP Predicted GO
BP GO:0006325 chromatin organization IEP Predicted GO
BP GO:0006334 nucleosome assembly IEP Predicted GO
BP GO:0006351 transcription, DNA-templated IEP Predicted GO
BP GO:0006399 tRNA metabolic process IEP Predicted GO
BP GO:0006418 tRNA aminoacylation for protein translation IEP Predicted GO
BP GO:0008033 tRNA processing IEP Predicted GO
MF GO:0008097 5S rRNA binding IEP Predicted GO
MF GO:0008168 methyltransferase activity IEP Predicted GO
MF GO:0008173 RNA methyltransferase activity IEP Predicted GO
MF GO:0008175 tRNA methyltransferase activity IEP Predicted GO
BP GO:0009059 macromolecule biosynthetic process IEP Predicted GO
BP GO:0009451 RNA modification IEP Predicted GO
MF GO:0009982 pseudouridine synthase activity IEP Predicted GO
MF GO:0016423 tRNA (guanine) methyltransferase activity IEP Predicted GO
MF GO:0016741 transferase activity, transferring one-carbon groups IEP Predicted GO
MF GO:0016779 nucleotidyltransferase activity IEP Predicted GO
MF GO:0016866 intramolecular transferase activity IEP Predicted GO
MF GO:0016874 ligase activity IEP Predicted GO
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP Predicted GO
MF GO:0019843 rRNA binding IEP Predicted GO
BP GO:0022607 cellular component assembly IEP Predicted GO
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Predicted GO
BP GO:0030488 tRNA methylation IEP Predicted GO
MF GO:0031267 small GTPase binding IEP Predicted GO
CC GO:0031515 tRNA (m1A) methyltransferase complex IEP Predicted GO
CC GO:0031968 organelle outer membrane IEP Predicted GO
CC GO:0031974 membrane-enclosed lumen IEP Predicted GO
MF GO:0034061 DNA polymerase activity IEP Predicted GO
MF GO:0034062 5'-3' RNA polymerase activity IEP Predicted GO
BP GO:0034622 cellular protein-containing complex assembly IEP Predicted GO
BP GO:0034645 cellular macromolecule biosynthetic process IEP Predicted GO
CC GO:0034708 methyltransferase complex IEP Predicted GO
BP GO:0034728 nucleosome organization IEP Predicted GO
BP GO:0042254 ribosome biogenesis IEP Predicted GO
BP GO:0043038 amino acid activation IEP Predicted GO
BP GO:0043039 tRNA aminoacylation IEP Predicted GO
CC GO:0043226 organelle IEP Predicted GO
CC GO:0043227 membrane-bounded organelle IEP Predicted GO
CC GO:0043229 intracellular organelle IEP Predicted GO
CC GO:0043231 intracellular membrane-bounded organelle IEP Predicted GO
CC GO:0043233 organelle lumen IEP Predicted GO
CC GO:0043527 tRNA methyltransferase complex IEP Predicted GO
BP GO:0043933 protein-containing complex subunit organization IEP Predicted GO
BP GO:0044085 cellular component biogenesis IEP Predicted GO
CC GO:0044424 intracellular part IEP Predicted GO
CC GO:0044429 mitochondrial part IEP Predicted GO
CC GO:0044444 cytoplasmic part IEP Predicted GO
CC GO:0044464 cell part IEP Predicted GO
BP GO:0065003 protein-containing complex assembly IEP Predicted GO
BP GO:0065004 protein-DNA complex assembly IEP Predicted GO
CC GO:0070013 intracellular organelle lumen IEP Predicted GO
BP GO:0071824 protein-DNA complex subunit organization IEP Predicted GO
BP GO:0071840 cellular component organization or biogenesis IEP Predicted GO
MF GO:0097159 organic cyclic compound binding IEP Predicted GO
BP GO:0097659 nucleic acid-templated transcription IEP Predicted GO
MF GO:0097747 RNA polymerase activity IEP Predicted GO
MF GO:0140098 catalytic activity, acting on RNA IEP Predicted GO
MF GO:0140101 catalytic activity, acting on a tRNA IEP Predicted GO
MF GO:1901363 heterocyclic compound binding IEP Predicted GO
InterPro domains Description Start Stop
IPR007319 SSU_processome_Utp21 687 899
IPR024977 Apc4_WD40_dom 191 277
IPR001680 WD40_repeat 550 586
No external refs found!