At4g09960

Description : K-box region and MADS-box transcription factor family protein [Source:TAIR;Acc:AT4G09960]

Gene families : OG_42_0000009 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Arabidopsis release: At4g09960
Cluster	HCCA clusters: Cluster_188

Target	Alias	Description	ECC score	Gene Family Method
A4A49_14235	No alias	developmental protein sepallata 1	0.04	Orthogroups_2024-Update
A4A49_14828	No alias	agamous-like mads-box protein agl104	0.03	Orthogroups_2024-Update
A4A49_15806	No alias	developmental protein sepallata 1	0.03	Orthogroups_2024-Update
A4A49_18989	No alias	agamous-like mads-box protein agl19	0.03	Orthogroups_2024-Update
A4A49_19521	No alias	developmental protein sepallata 1	0.03	Orthogroups_2024-Update
A4A49_20590	No alias	mads-box transcription factor 27	0.04	Orthogroups_2024-Update
A4A49_20769	No alias	agamous-like mads-box protein agl15	0.03	Orthogroups_2024-Update
A4A49_23146	No alias	mads-box transcription factor 6	0.03	Orthogroups_2024-Update
A4A49_27621	No alias	agamous-like mads-box protein agl9	0.02	Orthogroups_2024-Update
At1g01530	No alias	AGL28 [Source:UniProtKB/TrEMBL;Acc:A0A178WE04]	0.03	Orthogroups_2024-Update
At1g22130	No alias	Agamous-like MADS-box protein AGL104...	0.05	Orthogroups_2024-Update
At1g77950	No alias	AGAMOUS-like 67 [Source:UniProtKB/TrEMBL;Acc:F4I8L6]	0.04	Orthogroups_2024-Update
At1g77980	No alias	Agamous-like MADS-box protein AGL66...	0.04	Orthogroups_2024-Update
Bradi1g08340	No alias	K-box region and MADS-box transcription factor family protein	0.02	Orthogroups_2024-Update
Bradi1g48520	No alias	K-box region and MADS-box transcription factor family protein	0.03	Orthogroups_2024-Update
Bradi2g57000	No alias	K-box region and MADS-box transcription factor family protein	0.02	Orthogroups_2024-Update
Brara.C01461.1	No alias	MADS/AGL-type transcription factor	0.03	Orthogroups_2024-Update
Brara.D01509.1	No alias	MADS/AGL-type transcription factor	0.03	Orthogroups_2024-Update
Brara.E00519.1	No alias	MADS/AGL-type transcription factor	0.03	Orthogroups_2024-Update
Brara.G01817.1	No alias	MADS/AGL-type transcription factor	0.03	Orthogroups_2024-Update
Brara.I03027.1	No alias	regulatory protein *(SEPALLATA) of floral meristem...	0.03	Orthogroups_2024-Update
Brara.J01932.1	No alias	regulatory protein *(SEPALLATA) of floral meristem...	0.03	Orthogroups_2024-Update
GRMZM2G137510	No alias	AGAMOUS-like 8	0.03	Orthogroups_2024-Update
Glyma.05G050700	No alias	AGAMOUS-like 19	0.06	Orthogroups_2024-Update
Glyma.05G163200	No alias	K-box region and MADS-box transcription factor family protein	0.02	Orthogroups_2024-Update
Glyma.07G081300	No alias	AGAMOUS-like 6	0.03	Orthogroups_2024-Update
Glyma.08G282500	No alias	AGAMOUS-like 29	0.03	Orthogroups_2024-Update
Glyma.10G084700	No alias	AGAMOUS-like 62	0.03	Orthogroups_2024-Update
Glyma.10G085600	No alias	AGAMOUS-like 62	0.03	Orthogroups_2024-Update
Glyma.13G034100	No alias	K-box region and MADS-box transcription factor family protein	0.03	Orthogroups_2024-Update
Glyma.13G255200	No alias	AGAMOUS-like 21	0.03	Orthogroups_2024-Update
Glyma.17G081200	No alias	AGAMOUS-like 8	0.03	Orthogroups_2024-Update
Glyma.20G136700	No alias	AGAMOUS-like 62	0.04	Orthogroups_2024-Update
HORVU0Hr1G003020.3	No alias	regulatory protein *(AP1/CAL/FUL) of floral meristem...	0.02	Orthogroups_2024-Update
LOC_Os01g10504	No alias	OsMADS3 - MADS-box family gene with MIKCc type-box, expressed	0.03	Orthogroups_2024-Update
LOC_Os04g49150	No alias	OsMADS17 - MADS-box family gene with MIKCc type-box, expressed	0.03	Orthogroups_2024-Update
LOC_Os08g41960	No alias	OsMADS37 - MADS-box family gene with MIKC* type-box, expressed	0.02	Orthogroups_2024-Update
MA_458668g0010	No alias	(at2g45660 : 100.0) Controls flowering and is required...	0.02	Orthogroups_2024-Update
PSME_00023534-RA	No alias	(at2g22610 : 141.0) Di-glucose binding protein with...	0.02	Orthogroups_2024-Update
PSME_00042999-RA	No alias	no hits & (original description: no original description)	0.03	Orthogroups_2024-Update
Potri.001G284600	No alias	AGAMOUS-like 17	0.03	Orthogroups_2024-Update
Potri.002G062000	No alias	AGAMOUS-like 61	0.03	Orthogroups_2024-Update
Potri.003G119700	No alias	AGAMOUS-like 19	0.03	Orthogroups_2024-Update
Potri.004G064300	No alias	K-box region and MADS-box transcription factor family protein	0.05	Orthogroups_2024-Update
Potri.005G182200	No alias	K-box region and MADS-box transcription factor family protein	0.03	Orthogroups_2024-Update
Potri.013G104900	No alias	K-box region and MADS-box transcription factor family protein	0.03	Orthogroups_2024-Update
Potri.017G039800	No alias	AGAMOUS-like 62	0.03	Orthogroups_2024-Update
Pp1s209_130V6	No alias	mads-box transcription factor	0.02	Orthogroups_2024-Update
Seita.1G273400.1	No alias	regulatory protein *(SEPALLATA) of floral meristem...	0.03	Orthogroups_2024-Update
Seita.3G098400.1	No alias	MADS/AGL-type transcription factor	0.02	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	InterProScan predictions
MF	GO:0003700	DNA-binding transcription factor activity	IEA	InterProScan predictions
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IEA	InterProScan predictions
BP	GO:0006355	regulation of transcription, DNA-templated	IEA	InterProScan predictions
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044464	cell part	None	Extended
MF	GO:0046983	protein dimerization activity	IEA	InterProScan predictions
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0007165	signal transduction	IEP	Predicted GO
MF	GO:0009055	electron transfer activity	IEP	Predicted GO
MF	GO:0033925	mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase activity	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR002487	TF_Kbox	86	171
IPR002100	TF_MADSbox	10	57

External Links

No external refs found!

At4g09960

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation