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  5. Sobic.010G217532.1

Sobic.010G217532.1


Description : Unknown function


Gene families : OG_42_0000803 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000803_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor: Sobic.010G217532.1
Cluster HCAA Clusters: Cluster_28

Target Alias Description ECC score Gene Family Method Actions
A4A49_12129 No alias hypothetical protein 0.06 Orthogroups_2024-Update
A4A49_19758 No alias b-box domain protein 30 0.06 Orthogroups_2024-Update
A4A49_22924 No alias b-box zinc finger protein 32 0.04 Orthogroups_2024-Update
A4A49_62883 No alias b-box domain protein 30 0.06 Orthogroups_2024-Update
At3g21890 No alias BBX31 [Source:UniProtKB/TrEMBL;Acc:A0A178VEW7] 0.03 Orthogroups_2024-Update
At5g54470 No alias BBX29 [Source:UniProtKB/TrEMBL;Acc:A0A178UJV0] 0.05 Orthogroups_2024-Update
Brara.A02004.1 No alias BBX class-V transcription factor 0.03 Orthogroups_2024-Update
Brara.A02749.1 No alias BBX class-V transcription factor 0.05 Orthogroups_2024-Update
Brara.C03818.1 No alias BBX class-V transcription factor 0.03 Orthogroups_2024-Update
Glyma.12G196200 No alias B-box type zinc finger family protein 0.06 Orthogroups_2024-Update
LOC_Os02g07930 No alias B-box zinc finger family protein, putative, expressed 0.03 Orthogroups_2024-Update
LOC_Os08g08120 No alias B-box zinc finger family protein, putative, expressed 0.02 Orthogroups_2024-Update
Mp3g20050.1 No alias no hits & (original description: none) 0.02 Orthogroups_2024-Update
PSME_00053899-RA No alias (at4g27310 : 117.0) B-box type zinc finger family... 0.04 Orthogroups_2024-Update
Potri.011G125400 No alias B-box type zinc finger family protein 0.02 Orthogroups_2024-Update
Potri.013G150500 No alias B-box type zinc finger family protein 0.04 Orthogroups_2024-Update
Pp1s22_52V6 No alias F24B18.9; CONSTANS B-box zinc finger family protein... 0.05 Orthogroups_2024-Update
Pp1s38_346V6 No alias zinc finger (b-box type) family protein 0.03 Orthogroups_2024-Update
Pp1s97_104V6 No alias zinc finger (b-box type) family protein 0.03 Orthogroups_2024-Update
Seita.6G043200.1 No alias BBX class-V transcription factor 0.03 Orthogroups_2024-Update
Solyc02g079430 No alias Zinc finger, B-box (AHRD V3.3 *-* A0A103Y479_CYNCS) 0.04 Orthogroups_2024-Update
Solyc06g063280 No alias LOW QUALITY:Zinc finger family protein (AHRD V3.3 ***... 0.05 Orthogroups_2024-Update
Solyc07g053140 No alias Zinc finger, B-box (AHRD V3.3 *** A0A103Y7X2_CYNCS) 0.04 Orthogroups_2024-Update
Solyc10g006750 No alias ABC-2 and Plant PDR ABC-type transporter family protein... 0.04 Orthogroups_2024-Update
Solyc12g005750 No alias LOW QUALITY:Zinc finger protein CONSTANS-LIKE 14 (AHRD... 0.03 Orthogroups_2024-Update
Sopen06g022740 No alias hypothetical protein 0.03 Orthogroups_2024-Update
Sopen10g002670 No alias B-box zinc finger 0.03 Orthogroups_2024-Update
Sopen12g001590 No alias B-box zinc finger 0.03 Orthogroups_2024-Update
evm.model.contig_614.7 No alias (original description: no original description) 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003729 mRNA binding IEP Predicted GO
MF GO:0004089 carbonate dehydratase activity IEP Predicted GO
MF GO:0004427 inorganic diphosphatase activity IEP Predicted GO
MF GO:0004470 malic enzyme activity IEP Predicted GO
MF GO:0004471 malate dehydrogenase (decarboxylating) (NAD+) activity IEP Predicted GO
MF GO:0004619 phosphoglycerate mutase activity IEP Predicted GO
MF GO:0004779 sulfate adenylyltransferase activity IEP Predicted GO
MF GO:0004781 sulfate adenylyltransferase (ATP) activity IEP Predicted GO
MF GO:0005215 transporter activity IEP Predicted GO
CC GO:0005575 cellular_component IEP Predicted GO
CC GO:0005737 cytoplasm IEP Predicted GO
CC GO:0005849 mRNA cleavage factor complex IEP Predicted GO
BP GO:0006006 glucose metabolic process IEP Predicted GO
BP GO:0006007 glucose catabolic process IEP Predicted GO
BP GO:0006378 mRNA polyadenylation IEP Predicted GO
BP GO:0006810 transport IEP Predicted GO
MF GO:0015267 channel activity IEP Predicted GO
CC GO:0016020 membrane IEP Predicted GO
MF GO:0016615 malate dehydrogenase activity IEP Predicted GO
MF GO:0016757 transferase activity, transferring glycosyl groups IEP Predicted GO
MF GO:0016779 nucleotidyltransferase activity IEP Predicted GO
MF GO:0016868 intramolecular transferase activity, phosphotransferases IEP Predicted GO
BP GO:0019320 hexose catabolic process IEP Predicted GO
MF GO:0022803 passive transmembrane transporter activity IEP Predicted GO
MF GO:0022857 transmembrane transporter activity IEP Predicted GO
MF GO:0030145 manganese ion binding IEP Predicted GO
BP GO:0031123 RNA 3'-end processing IEP Predicted GO
BP GO:0031124 mRNA 3'-end processing IEP Predicted GO
MF GO:0033926 glycopeptide alpha-N-acetylgalactosaminidase activity IEP Predicted GO
BP GO:0043631 RNA polyadenylation IEP Predicted GO
BP GO:0046365 monosaccharide catabolic process IEP Predicted GO
BP GO:0051179 localization IEP Predicted GO
BP GO:0051234 establishment of localization IEP Predicted GO
BP GO:0055085 transmembrane transport IEP Predicted GO
MF GO:0070566 adenylyltransferase activity IEP Predicted GO
MF GO:0140103 catalytic activity, acting on a glycoprotein IEP Predicted GO

No InterPro domains available for this sequence

No external refs found!