Sobic.010G218900.2

Description : ASK-type linker component of SCF E3 ubiquitin ligase complexes

Gene families : OG_42_0000356 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000356_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Sorghum bicolor: Sobic.010G218900.2
Cluster	HCAA Clusters: Cluster_139

Target	Alias	Description	ECC score	Gene Family Method
At2g20160	No alias	SKP1-like protein 17 [Source:UniProtKB/Swiss-Prot;Acc:Q9SL65]	0.03	Orthogroups_2024-Update
At3g21860	No alias	SKP1-like protein 10 [Source:UniProtKB/Swiss-Prot;Acc:Q9LSX8]	0.02	Orthogroups_2024-Update
At3g60010	No alias	SK13 [Source:UniProtKB/TrEMBL;Acc:A0A178VIM9]	0.03	Orthogroups_2024-Update
GRMZM2G060394	No alias	SKP1-like 4	0.02	Orthogroups_2024-Update
Glyma.02G045700	No alias	S phase kinase-associated protein 1	0.05	Orthogroups_2024-Update
Glyma.14G222100	No alias	S phase kinase-associated protein 1	0.02	Orthogroups_2024-Update
HORVU5Hr1G090360.1	No alias	ASK-type linker component of SCF E3 ubiquitin ligase complexes	0.03	Orthogroups_2024-Update
LOC_Os09g10200	No alias	Skp1 family, dimerisation domain containing protein, expressed	0.05	Orthogroups_2024-Update
MA_10316948g0010	No alias	(at5g42190 : 161.0) Similar to SKP1 in yeast and humans...	0.02	Orthogroups_2024-Update
PSME_00003855-RA	No alias	(at5g42190 : 196.0) Similar to SKP1 in yeast and humans...	0.02	Orthogroups_2024-Update
PSME_00010537-RA	No alias	(at1g75950 : 182.0) SKP1 is core component of the SCF...	0.02	Orthogroups_2024-Update
PSME_00010542-RA	No alias	(at5g42190 : 182.0) Similar to SKP1 in yeast and humans...	0.05	Orthogroups_2024-Update
PSME_00046645-RA	No alias	(at5g42190 : 166.0) Similar to SKP1 in yeast and humans...	0.02	Orthogroups_2024-Update
PSME_00054693-RA	No alias	(at5g42190 : 182.0) Similar to SKP1 in yeast and humans...	0.02	Orthogroups_2024-Update
PSME_00055606-RA	No alias	(at1g75950 : 185.0) SKP1 is core component of the SCF...	0.02	Orthogroups_2024-Update
Potri.004G175900	No alias	E3 ubiquitin ligase SCF complex subunit SKP1/ASK1 family protein	0.03	Orthogroups_2024-Update
Potri.012G085200	No alias	SKP1-like 11	0.04	Orthogroups_2024-Update
Seita.8G115900.1	No alias	ASK-type linker component of SCF E3 ubiquitin ligase complexes	0.03	Orthogroups_2024-Update
Solyc01g111640	No alias	SKP1-like protein (AHRD V3.3 *** C3V9V9_CITMA)	0.03	Orthogroups_2024-Update
Solyc10g055610	No alias	SKP1-like protein (AHRD V3.3 *** O82463_NICCL)	0.04	Orthogroups_2024-Update
evm.model.contig_494.7	No alias	(at4g34210 : 147.0) one of 20 SKP1 homologs in...	0.01	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
BP	GO:0006508	proteolysis	None	Extended
BP	GO:0006511	ubiquitin-dependent protein catabolic process	IEA	16Dec
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009056	catabolic process	None	Extended
BP	GO:0009057	macromolecule catabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0019941	modification-dependent protein catabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043632	modification-dependent macromolecule catabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044248	cellular catabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044265	cellular macromolecule catabolic process	None	Extended
BP	GO:0051603	proteolysis involved in cellular protein catabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901575	organic substance catabolic process	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
MF	GO:0004867	serine-type endopeptidase inhibitor activity	IEP	Predicted GO
BP	GO:0006082	organic acid metabolic process	IEP	Predicted GO
BP	GO:0006629	lipid metabolic process	IEP	Predicted GO
BP	GO:0006631	fatty acid metabolic process	IEP	Predicted GO
BP	GO:0006633	fatty acid biosynthetic process	IEP	Predicted GO
BP	GO:0008610	lipid biosynthetic process	IEP	Predicted GO
BP	GO:0016053	organic acid biosynthetic process	IEP	Predicted GO
MF	GO:0016790	thiolester hydrolase activity	IEP	Predicted GO
BP	GO:0019752	carboxylic acid metabolic process	IEP	Predicted GO
BP	GO:0032787	monocarboxylic acid metabolic process	IEP	Predicted GO
BP	GO:0043436	oxoacid metabolic process	IEP	Predicted GO
BP	GO:0044255	cellular lipid metabolic process	IEP	Predicted GO
BP	GO:0044283	small molecule biosynthetic process	IEP	Predicted GO
BP	GO:0046394	carboxylic acid biosynthetic process	IEP	Predicted GO
BP	GO:0072330	monocarboxylic acid biosynthetic process	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR016073	Skp1_comp_POZ	20	83
IPR016072	Skp1_comp_dimer	126	172

External Links

No external refs found!

Sobic.010G218900.2

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation