Sobic.010G221500.1

Description : MADS/AGL-type transcription factor

Gene families : OG_42_0000009 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Sorghum bicolor: Sobic.010G221500.1
Cluster	HCAA Clusters: Cluster_206

Target	Alias	Description	ECC score	Gene Family Method
A4A49_27621	No alias	agamous-like mads-box protein agl9	0.02	Orthogroups_2024-Update
At2g22630	No alias	AGL17 [Source:UniProtKB/TrEMBL;Acc:A0A178W215]	0.03	Orthogroups_2024-Update
At3g02310	No alias	SEP2 [Source:UniProtKB/TrEMBL;Acc:A0A178V680]	0.03	Orthogroups_2024-Update
Bradi2g26320	No alias	AGAMOUS-like 62	0.02	Orthogroups_2024-Update
Bradi5g12437	No alias	AGAMOUS-like 16	0.04	Orthogroups_2024-Update
Brara.C01460.1	No alias	MADS/AGL-type transcription factor	0.02	Orthogroups_2024-Update
Brara.D02757.1	No alias	MADS/AGL-type transcription factor	0.02	Orthogroups_2024-Update
Brara.I00639.1	No alias	regulatory protein *(AP1/CAL/FUL) of floral meristem...	0.02	Orthogroups_2024-Update
Brara.K01743.1	No alias	MADS/AGL-type transcription factor	0.02	Orthogroups_2024-Update
GRMZM2G044408	No alias	AGAMOUS-like 44	0.02	Orthogroups_2024-Update
Glyma.02G185500	No alias	AGAMOUS-like 18	0.03	Orthogroups_2024-Update
Glyma.07G081300	No alias	AGAMOUS-like 6	0.05	Orthogroups_2024-Update
Glyma.08G034200	No alias	AGAMOUS-like 29	0.04	Orthogroups_2024-Update
Glyma.11G252300	No alias	K-box region and MADS-box transcription factor family protein	0.02	Orthogroups_2024-Update
Glyma.17G080900	No alias	K-box region and MADS-box transcription factor family protein	0.02	Orthogroups_2024-Update
Glyma.20G136600	No alias	AGAMOUS-like 62	0.03	Orthogroups_2024-Update
HORVU1Hr1G008300.3	No alias	MADS/AGL-type transcription factor	0.03	Orthogroups_2024-Update
HORVU1Hr1G063620.2	No alias	component *(PISTILLATA) of AP3-PISTILLATA organ-identity...	0.05	Orthogroups_2024-Update
HORVU5Hr1G095710.1	No alias	MADS/AGL-type transcription factor	0.02	Orthogroups_2024-Update
LOC_Os06g30830	No alias	OsMADS76 - MADS-box family gene with M-alpha type-box, expressed	0.02	Orthogroups_2024-Update
MA_35712g0010	No alias	(at4g11880 : 102.0) AGL12, AGL14, and AGL17 are all...	0.03	Orthogroups_2024-Update
PSME_00018760-RA	No alias	(at5g62165 : 131.0) Encodes a MADS box transcription...	0.05	Orthogroups_2024-Update
Potri.001G058400	No alias	K-box region and MADS-box transcription factor family protein	0.03	Orthogroups_2024-Update
Potri.005G182200	No alias	K-box region and MADS-box transcription factor family protein	0.03	Orthogroups_2024-Update
Potri.012G062300	No alias	AGAMOUS-like 8	0.02	Orthogroups_2024-Update
Solyc05g015730	No alias	No description available	0.03	Orthogroups_2024-Update
Solyc05g015750	No alias	SEPALLATA3	0.03	Orthogroups_2024-Update
Solyc08g080100	No alias	MADS box transcription factor (AHRD V3.3 *** C3PTE7_POPTO)	0.03	Orthogroups_2024-Update
Solyc12g056460	No alias	MADS box transcription factor (AHRD V3.3 *** C3PTE7_POPTO)	0.04	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	16Dec
MF	GO:0003700	DNA-binding transcription factor activity	IEA	16Dec
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IEA	16Dec
BP	GO:0006355	regulation of transcription, DNA-templated	IEA	16Dec
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044464	cell part	None	Extended
MF	GO:0046983	protein dimerization activity	IEA	16Dec
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0004497	monooxygenase activity	IEP	Predicted GO
MF	GO:0004842	ubiquitin-protein transferase activity	IEP	Predicted GO
MF	GO:0005506	iron ion binding	IEP	Predicted GO
BP	GO:0009733	response to auxin	IEP	Predicted GO
MF	GO:0010181	FMN binding	IEP	Predicted GO
MF	GO:0016491	oxidoreductase activity	IEP	Predicted GO
BP	GO:0016567	protein ubiquitination	IEP	Predicted GO
MF	GO:0016705	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	IEP	Predicted GO
MF	GO:0020037	heme binding	IEP	Predicted GO
BP	GO:0032446	protein modification by small protein conjugation	IEP	Predicted GO
MF	GO:0043167	ion binding	IEP	Predicted GO
MF	GO:0046906	tetrapyrrole binding	IEP	Predicted GO
MF	GO:0048037	cofactor binding	IEP	Predicted GO
MF	GO:0050662	coenzyme binding	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR002487	TF_Kbox	87	165
IPR002100	TF_MADSbox	10	57

External Links

No external refs found!

Sobic.010G221500.1

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation