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  5. Sobic.010G230700.1

Sobic.010G230700.1


Description : component *(eL27) of large ribosomal-subunit (LSU) proteome


Gene families : OG_42_0001324 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001324_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor: Sobic.010G230700.1
Cluster HCAA Clusters: Cluster_24

Target Alias Description ECC score Gene Family Method Actions
166700 No alias Ribosomal L27e protein family 0.2 Orthogroups_2024-Update
A4A49_05318 No alias 60s ribosomal protein l27 0.22 Orthogroups_2024-Update
A4A49_21973 No alias 60s ribosomal protein l27 0.07 Orthogroups_2024-Update
At2g32220 No alias 60S ribosomal protein L27-1... 0.06 Orthogroups_2024-Update
At3g22230 No alias 60S ribosomal protein L27-2... 0.04 Orthogroups_2024-Update
At4g15000 No alias 60S ribosomal protein L27 [Source:UniProtKB/TrEMBL;Acc:Q0WRB8] 0.11 Orthogroups_2024-Update
Bradi1g30210 No alias Ribosomal L27e protein family 0.03 Orthogroups_2024-Update
Brara.A02020.1 No alias component *(eL27) of large ribosomal-subunit (LSU) proteome 0.12 Orthogroups_2024-Update
Brara.A02735.1 No alias component *(eL27) of large ribosomal-subunit (LSU) proteome 0.13 Orthogroups_2024-Update
Brara.C03864.1 No alias component *(eL27) of large ribosomal-subunit (LSU) proteome 0.26 Orthogroups_2024-Update
Brara.E01420.1 No alias component *(eL27) of large ribosomal-subunit (LSU) proteome 0.25 Orthogroups_2024-Update
Brara.E02021.1 No alias component *(eL27) of large ribosomal-subunit (LSU) proteome 0.03 Orthogroups_2024-Update
Brara.H00790.1 No alias component *(eL27) of large ribosomal-subunit (LSU) proteome 0.19 Orthogroups_2024-Update
Cre17.g701650 No alias Ribosomal L27e protein family 0.26 Orthogroups_2024-Update
GRMZM2G016250 No alias Ribosomal L27e protein family 0.22 Orthogroups_2024-Update
GRMZM2G326066 No alias Ribosomal L27e protein family 0.12 Orthogroups_2024-Update
Glyma.05G132800 No alias Ribosomal L27e protein family 0.03 Orthogroups_2024-Update
Glyma.09G052100 No alias Ribosomal L27e protein family 0.06 Orthogroups_2024-Update
Glyma.15G158400 No alias Ribosomal L27e protein family 0.15 Orthogroups_2024-Update
HORVU7Hr1G063280.1 No alias component *(eL27) of large ribosomal-subunit (LSU) proteome 0.15 Orthogroups_2024-Update
Kfl00071_0270 kfl00071_0270_v1.1 (q05462|rl27_pea : 209.0) 60S ribosomal protein L27 -... 0.1 Orthogroups_2024-Update
LOC_Os02g18380 No alias 60S ribosomal protein L27-3, putative, expressed 0.02 Orthogroups_2024-Update
Mp4g23910.1 No alias component RPL27 of LSU proteome component 0.02 Orthogroups_2024-Update
PSME_00015628-RA No alias (at3g22230 : 220.0) Ribosomal L27e protein family;... 0.13 Orthogroups_2024-Update
Potri.001G342500 No alias Ribosomal L27e protein family 0.04 Orthogroups_2024-Update
Pp1s101_74V6 No alias ribosomal protein 0.17 Orthogroups_2024-Update
Pp1s221_49V6 No alias ribosomal protein 0.3 Orthogroups_2024-Update
Pp1s83_116V6 No alias 60S ribosomal protein L27 [Pisum sativum] 0.16 Orthogroups_2024-Update
Seita.4G160400.1 No alias component *(eL27) of large ribosomal-subunit (LSU) proteome 0.17 Orthogroups_2024-Update
Solyc06g073300 No alias 60S ribosomal protein L27 (AHRD V3.3 *** A0A0V0HNB9_SOLCH) 0.32 Orthogroups_2024-Update
Solyc07g043360 No alias 60S ribosomal protein L27 (AHRD V3.3 *** K4CEJ5_SOLLC) 0.11 Orthogroups_2024-Update
Sopen06g029660 No alias Ribosomal L27e protein family 0.37 Orthogroups_2024-Update
Sopen07g022920 No alias Ribosomal L27e protein family 0.26 Orthogroups_2024-Update
evm.model.contig_2045.6 No alias (p41101|rl27_soltu : 144.0) 60S ribosomal protein L27 -... 0.41 Orthogroups_2024-Update
evm.model.tig00021275.23 No alias (at3g22230 : 163.0) Ribosomal L27e protein family;... 0.21 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA 16Dec
CC GO:0005840 ribosome IEA 16Dec
BP GO:0006412 translation IEA 16Dec
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Type GO Term Name Evidence Source
BP GO:0001522 pseudouridine synthesis IEP Predicted GO
MF GO:0003723 RNA binding IEP Predicted GO
MF GO:0004332 fructose-bisphosphate aldolase activity IEP Predicted GO
CC GO:0015934 large ribosomal subunit IEP Predicted GO
MF GO:0016832 aldehyde-lyase activity IEP Predicted GO
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Predicted GO
MF GO:0030515 snoRNA binding IEP Predicted GO
BP GO:0042254 ribosome biogenesis IEP Predicted GO
CC GO:0044391 ribosomal subunit IEP Predicted GO
InterPro domains Description Start Stop
IPR001141 Ribosomal_L27e 143 228
No external refs found!