Sobic.010G231300.1

Description : ligand-gated cation channel *(GLR)

Gene families : OG_42_0000065 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000065_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Sorghum bicolor: Sobic.010G231300.1
Cluster	HCAA Clusters: Cluster_195

Target	Alias	Description	ECC score	Gene Family Method
A4A49_28967	No alias	glutamate receptor 2.8	0.05	Orthogroups_2024-Update
At2g29100	No alias	Glutamate receptor [Source:UniProtKB/TrEMBL;Acc:A0A178VR79]	0.03	Orthogroups_2024-Update
At4g31710	No alias	glutamate receptor 2.4 [Source:TAIR;Acc:AT4G31710]	0.03	Orthogroups_2024-Update
At5g27100	No alias	Glutamate receptor 2.1 [Source:UniProtKB/Swiss-Prot;Acc:O04660]	0.02	Orthogroups_2024-Update
Bradi4g30840	No alias	glutamate receptor 2.7	0.02	Orthogroups_2024-Update
Brara.E01143.1	No alias	ligand-gated cation channel *(GLR)	0.02	Orthogroups_2024-Update
Brara.F03008.1	No alias	ligand-gated cation channel *(GLR)	0.02	Orthogroups_2024-Update
Brara.I03484.1	No alias	ligand-gated cation channel *(GLR)	0.03	Orthogroups_2024-Update
GRMZM2G148807	No alias	glutamate receptor 3.4	0.03	Orthogroups_2024-Update
Glyma.01G157900	No alias	glutamate receptor 3.6	0.03	Orthogroups_2024-Update
Glyma.13G272400	No alias	glutamate receptor 2.8	0.03	Orthogroups_2024-Update
HORVU0Hr1G036590.3	No alias	ligand-gated cation channel *(GLR)	0.02	Orthogroups_2024-Update
HORVU2Hr1G045730.11	No alias	ligand-gated cation channel *(GLR)	0.03	Orthogroups_2024-Update
HORVU2Hr1G049510.4	No alias	ligand-gated cation channel *(GLR)	0.02	Orthogroups_2024-Update
HORVU5Hr1G063420.2	No alias	ligand-gated cation channel *(GLR)	0.03	Orthogroups_2024-Update
HORVU5Hr1G072170.1	No alias	ligand-gated cation channel *(GLR)	0.02	Orthogroups_2024-Update
LOC_Os04g49570	No alias	glutamate receptor, putative, expressed	0.03	Orthogroups_2024-Update
LOC_Os07g01310	No alias	glutamate receptor, putative, expressed	0.02	Orthogroups_2024-Update
LOC_Os09g26144	No alias	glutamate receptor, putative, expressed	0.04	Orthogroups_2024-Update
MA_354015g0010	No alias	(at1g05200 : 251.0) member of Putative ligand-gated ion...	0.02	Orthogroups_2024-Update
MA_9224859g0010	No alias	(at4g35290 : 187.0) Encodes a putative glutamate...	0.04	Orthogroups_2024-Update
PSME_00005234-RA	No alias	(at1g05200 : 189.0) member of Putative ligand-gated ion...	0.02	Orthogroups_2024-Update
PSME_00020112-RA	No alias	(at1g42540 : 726.0) member of Putative ligand-gated ion...	0.03	Orthogroups_2024-Update
PSME_00021964-RA	No alias	(at1g05200 : 282.0) member of Putative ligand-gated ion...	0.03	Orthogroups_2024-Update
PSME_00023170-RA	No alias	(at1g42540 : 830.0) member of Putative ligand-gated ion...	0.02	Orthogroups_2024-Update
PSME_00050642-RA	No alias	(q7xp59\|glr31_orysa : 567.0) Glutamate receptor 3.1...	0.02	Orthogroups_2024-Update
Potri.014G152200	No alias	glutamate receptor 3.4	0.03	Orthogroups_2024-Update
Seita.4G260500.1	No alias	ligand-gated cation channel *(GLR)	0.03	Orthogroups_2024-Update
Sobic.002G002700.1	No alias	ligand-gated cation channel *(GLR)	0.03	Orthogroups_2024-Update
Solyc06g063190	No alias	glutamate receptor-like 2.3	0.04	Orthogroups_2024-Update
Solyc07g052400	No alias	glutamate receptor-like 3.2	0.03	Orthogroups_2024-Update
Sopen05g026960	No alias	Receptor family ligand binding region	0.05	Orthogroups_2024-Update
Sopen06g022660	No alias	Receptor family ligand binding region	0.02	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005215	transporter activity	None	Extended
MF	GO:0005216	ion channel activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
MF	GO:0015075	ion transmembrane transporter activity	None	Extended
MF	GO:0015267	channel activity	None	Extended
MF	GO:0015276	ligand-gated ion channel activity	IEA	16Dec
MF	GO:0015318	inorganic molecular entity transmembrane transporter activity	None	Extended
CC	GO:0016020	membrane	IEA	16Dec
MF	GO:0022803	passive transmembrane transporter activity	None	Extended
MF	GO:0022834	ligand-gated channel activity	None	Extended
MF	GO:0022836	gated channel activity	None	Extended
MF	GO:0022838	substrate-specific channel activity	None	Extended
MF	GO:0022839	ion gated channel activity	None	Extended
MF	GO:0022857	transmembrane transporter activity	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000271	polysaccharide biosynthetic process	IEP	Predicted GO
MF	GO:0003729	mRNA binding	IEP	Predicted GO
MF	GO:0003824	catalytic activity	IEP	Predicted GO
MF	GO:0004144	diacylglycerol O-acyltransferase activity	IEP	Predicted GO
MF	GO:0004332	fructose-bisphosphate aldolase activity	IEP	Predicted GO
MF	GO:0004674	protein serine/threonine kinase activity	IEP	Predicted GO
MF	GO:0004721	phosphoprotein phosphatase activity	IEP	Predicted GO
CC	GO:0005849	mRNA cleavage factor complex	IEP	Predicted GO
BP	GO:0005975	carbohydrate metabolic process	IEP	Predicted GO
BP	GO:0005976	polysaccharide metabolic process	IEP	Predicted GO
BP	GO:0006073	cellular glucan metabolic process	IEP	Predicted GO
BP	GO:0006378	mRNA polyadenylation	IEP	Predicted GO
BP	GO:0006720	isoprenoid metabolic process	IEP	Predicted GO
MF	GO:0008138	protein tyrosine/serine/threonine phosphatase activity	IEP	Predicted GO
MF	GO:0008194	UDP-glycosyltransferase activity	IEP	Predicted GO
BP	GO:0008299	isoprenoid biosynthetic process	IEP	Predicted GO
BP	GO:0008610	lipid biosynthetic process	IEP	Predicted GO
BP	GO:0009058	biosynthetic process	IEP	Predicted GO
BP	GO:0009250	glucan biosynthetic process	IEP	Predicted GO
BP	GO:0009690	cytokinin metabolic process	IEP	Predicted GO
MF	GO:0010181	FMN binding	IEP	Predicted GO
BP	GO:0010817	regulation of hormone levels	IEP	Predicted GO
BP	GO:0016051	carbohydrate biosynthetic process	IEP	Predicted GO
MF	GO:0016411	acylglycerol O-acyltransferase activity	IEP	Predicted GO
MF	GO:0016645	oxidoreductase activity, acting on the CH-NH group of donors	IEP	Predicted GO
MF	GO:0016757	transferase activity, transferring glycosyl groups	IEP	Predicted GO
MF	GO:0016759	cellulose synthase activity	IEP	Predicted GO
MF	GO:0016760	cellulose synthase (UDP-forming) activity	IEP	Predicted GO
MF	GO:0016791	phosphatase activity	IEP	Predicted GO
MF	GO:0016832	aldehyde-lyase activity	IEP	Predicted GO
MF	GO:0019139	cytokinin dehydrogenase activity	IEP	Predicted GO
BP	GO:0030243	cellulose metabolic process	IEP	Predicted GO
BP	GO:0030244	cellulose biosynthetic process	IEP	Predicted GO
BP	GO:0031123	RNA 3'-end processing	IEP	Predicted GO
BP	GO:0031124	mRNA 3'-end processing	IEP	Predicted GO
BP	GO:0033692	cellular polysaccharide biosynthetic process	IEP	Predicted GO
BP	GO:0034637	cellular carbohydrate biosynthetic process	IEP	Predicted GO
BP	GO:0034754	cellular hormone metabolic process	IEP	Predicted GO
MF	GO:0035251	UDP-glucosyltransferase activity	IEP	Predicted GO
BP	GO:0042445	hormone metabolic process	IEP	Predicted GO
MF	GO:0042578	phosphoric ester hydrolase activity	IEP	Predicted GO
BP	GO:0043631	RNA polyadenylation	IEP	Predicted GO
BP	GO:0044042	glucan metabolic process	IEP	Predicted GO
BP	GO:0044237	cellular metabolic process	IEP	Predicted GO
BP	GO:0044249	cellular biosynthetic process	IEP	Predicted GO
BP	GO:0044255	cellular lipid metabolic process	IEP	Predicted GO
BP	GO:0044262	cellular carbohydrate metabolic process	IEP	Predicted GO
BP	GO:0044264	cellular polysaccharide metabolic process	IEP	Predicted GO
BP	GO:0045017	glycerolipid biosynthetic process	IEP	Predicted GO
MF	GO:0046527	glucosyltransferase activity	IEP	Predicted GO
BP	GO:0051273	beta-glucan metabolic process	IEP	Predicted GO
BP	GO:0051274	beta-glucan biosynthetic process	IEP	Predicted GO
BP	GO:0055085	transmembrane transport	IEP	Predicted GO
MF	GO:0070569	uridylyltransferase activity	IEP	Predicted GO
BP	GO:1901576	organic substance biosynthetic process	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR001828	ANF_lig-bd_rcpt	47	405
IPR001320	Iontro_rcpt	808	837
IPR001638	Solute-binding_3/MltF_N	488	807

External Links

No external refs found!

Sobic.010G231300.1

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation