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  5. Sobic.010G236200.1

Sobic.010G236200.1


Description : component *(SMC5) of homologous recombination repair Smc5-Smc6 complex


Gene families : OG_42_0004939 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0004939_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor: Sobic.010G236200.1
Cluster HCAA Clusters: Cluster_232

Target Alias Description ECC score Gene Family Method Actions
Seita.4G257700.1 No alias component *(SMC5) of homologous recombination repair... 0.03 Orthogroups_2024-Update
evm.model.tig00000984.18 No alias (at5g15920 : 305.0) Encodes SMC5 (STRUCTURAL MAINTENANCE... 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP Predicted GO
MF GO:0004674 protein serine/threonine kinase activity IEP Predicted GO
MF GO:0005524 ATP binding IEP Predicted GO
BP GO:0006139 nucleobase-containing compound metabolic process IEP Predicted GO
BP GO:0006259 DNA metabolic process IEP Predicted GO
BP GO:0006281 DNA repair IEP Predicted GO
BP GO:0006298 mismatch repair IEP Predicted GO
BP GO:0006974 cellular response to DNA damage stimulus IEP Predicted GO
MF GO:0008097 5S rRNA binding IEP Predicted GO
MF GO:0019843 rRNA binding IEP Predicted GO
MF GO:0030983 mismatched DNA binding IEP Predicted GO
BP GO:0033554 cellular response to stress IEP Predicted GO
MF GO:0034062 5'-3' RNA polymerase activity IEP Predicted GO
BP GO:0034641 cellular nitrogen compound metabolic process IEP Predicted GO
BP GO:0043170 macromolecule metabolic process IEP Predicted GO
BP GO:0044260 cellular macromolecule metabolic process IEP Predicted GO
BP GO:0051716 cellular response to stimulus IEP Predicted GO
MF GO:0071949 FAD binding IEP Predicted GO
BP GO:0090304 nucleic acid metabolic process IEP Predicted GO
MF GO:0097747 RNA polymerase activity IEP Predicted GO
InterPro domains Description Start Stop
IPR003395 RecF/RecN/SMC_N 31 999
No external refs found!