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  5. Sobic.010G252200.1

Sobic.010G252200.1


Description : Unknown function


Gene families : OG_42_0000146 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000146_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor: Sobic.010G252200.1
Cluster HCAA Clusters: Cluster_13

Target Alias Description ECC score Gene Family Method Actions
420699 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
420704 No alias PENTATRICOPEPTIDE REPEAT 596 0.02 Orthogroups_2024-Update
421992 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 Orthogroups_2024-Update
428276 No alias PENTATRICOPEPTIDE REPEAT 596 0.03 Orthogroups_2024-Update
55637 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.05 Orthogroups_2024-Update
At3g11350 No alias Pentatricopeptide repeat (PPR) superfamily protein... 0.03 Orthogroups_2024-Update
At3g11380 No alias Pentatricopeptide repeat (PPR) superfamily protein... 0.06 Orthogroups_2024-Update
Brara.J00003.1 No alias splicing factor *(CRR16) 0.02 Orthogroups_2024-Update
GRMZM2G105229 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.13 Orthogroups_2024-Update
GRMZM2G130366 No alias PENTATRICOPEPTIDE REPEAT 596 0.02 Orthogroups_2024-Update
GRMZM2G135940 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.1 Orthogroups_2024-Update
LOC_Os10g35750 No alias pentatricopeptide, putative, expressed 0.03 Orthogroups_2024-Update
LOC_Os12g07260 No alias PPR repeat domain containing protein, putative, expressed 0.04 Orthogroups_2024-Update
LOC_Os12g34340 No alias pentatricopeptide, putative, expressed 0.03 Orthogroups_2024-Update
MA_29806g0010 No alias (at1g60770 : 282.0) Tetratricopeptide repeat (TPR)-like... 0.03 Orthogroups_2024-Update
PSME_00030176-RA No alias (at1g02150 : 296.0) Tetratricopeptide repeat (TPR)-like... 0.02 Orthogroups_2024-Update
PSME_00052183-RA No alias (at1g02150 : 315.0) Tetratricopeptide repeat (TPR)-like... 0.02 Orthogroups_2024-Update
Sopen02g023200 No alias PPR repeat 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEP Predicted GO
MF GO:0043169 cation binding IEP Predicted GO
MF GO:0046872 metal ion binding IEP Predicted GO
MF GO:0046914 transition metal ion binding IEP Predicted GO
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 155 183
IPR002885 Pentatricopeptide_repeat 367 387
IPR002885 Pentatricopeptide_repeat 190 232
No external refs found!