1. Home
  2. Species
  3. Sorghum bicolor
  4. Sequence
  5. Sobic.010G256000.1

Sobic.010G256000.1


Description : Unknown function


Gene families : OG_42_0011867 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0011867_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor: Sobic.010G256000.1
Cluster HCAA Clusters: Cluster_17

Target Alias Description ECC score Gene Family Method Actions
Bradi1g34572 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
Seita.4G272100.1 No alias Unknown function 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA 16Dec
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000725 recombinational repair IEP Predicted GO
MF GO:0003697 single-stranded DNA binding IEP Predicted GO
MF GO:0003916 DNA topoisomerase activity IEP Predicted GO
CC GO:0005694 chromosome IEP Predicted GO
BP GO:0006139 nucleobase-containing compound metabolic process IEP Predicted GO
BP GO:0006259 DNA metabolic process IEP Predicted GO
BP GO:0006265 DNA topological change IEP Predicted GO
BP GO:0006281 DNA repair IEP Predicted GO
BP GO:0006298 mismatch repair IEP Predicted GO
BP GO:0006310 DNA recombination IEP Predicted GO
BP GO:0006974 cellular response to DNA damage stimulus IEP Predicted GO
BP GO:0009262 deoxyribonucleotide metabolic process IEP Predicted GO
BP GO:0009263 deoxyribonucleotide biosynthetic process IEP Predicted GO
MF GO:0030983 mismatched DNA binding IEP Predicted GO
MF GO:0031625 ubiquitin protein ligase binding IEP Predicted GO
BP GO:0033554 cellular response to stress IEP Predicted GO
MF GO:0044389 ubiquitin-like protein ligase binding IEP Predicted GO
BP GO:0051716 cellular response to stimulus IEP Predicted GO
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 198 238
IPR002885 Pentatricopeptide_repeat 331 379
IPR002885 Pentatricopeptide_repeat 432 480
IPR002885 Pentatricopeptide_repeat 507 531
IPR002885 Pentatricopeptide_repeat 305 328
IPR032867 DYW_dom 648 740
No external refs found!