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  5. Sobic.010G262800.1

Sobic.010G262800.1


Description : SSU processome assembly factor *(UTP18)


Gene families : OG_42_0004898 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0004898_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor: Sobic.010G262800.1
Cluster HCAA Clusters: Cluster_46

Target Alias Description ECC score Gene Family Method Actions
Bradi2g18710 No alias Transducin/WD40 repeat-like superfamily protein 0.05 Orthogroups_2024-Update
Brara.J02043.1 No alias SSU processome assembly factor *(UTP18) 0.09 Orthogroups_2024-Update
Cre06.g255950 No alias Transducin/WD40 repeat-like superfamily protein 0.04 Orthogroups_2024-Update
HORVU5Hr1G105970.3 No alias SSU processome assembly factor *(UTP18) 0.03 Orthogroups_2024-Update
Kfl00670_0030 kfl00670_0030_v1.1 (at5g14050 : 411.0) Transducin/WD40 repeat-like... 0.02 Orthogroups_2024-Update
Potri.005G218600 No alias Transducin/WD40 repeat-like superfamily protein 0.02 Orthogroups_2024-Update
Pp1s159_80V6 No alias wd repeat protein 0.08 Orthogroups_2024-Update
Solyc10g080180 No alias Transducin/WD40 repeat-like superfamily protein (AHRD... 0.04 Orthogroups_2024-Update
Sopen10g030790 No alias WD domain, G-beta repeat 0.02 Orthogroups_2024-Update
evm.model.tig00020554.145 No alias (at5g14050 : 296.0) Transducin/WD40 repeat-like... 0.05 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA 16Dec
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Predicted GO
MF GO:0003723 RNA binding IEP Predicted GO
MF GO:0003743 translation initiation factor activity IEP Predicted GO
CC GO:0005737 cytoplasm IEP Predicted GO
CC GO:0005852 eukaryotic translation initiation factor 3 complex IEP Predicted GO
BP GO:0006413 translational initiation IEP Predicted GO
MF GO:0008135 translation factor activity, RNA binding IEP Predicted GO
CC GO:0030684 preribosome IEP Predicted GO
MF GO:0031369 translation initiation factor binding IEP Predicted GO
CC GO:0032040 small-subunit processome IEP Predicted GO
CC GO:0032991 protein-containing complex IEP Predicted GO
CC GO:0044424 intracellular part IEP Predicted GO
CC GO:0044444 cytoplasmic part IEP Predicted GO
CC GO:0044464 cell part IEP Predicted GO
CC GO:1990904 ribonucleoprotein complex IEP Predicted GO
InterPro domains Description Start Stop
IPR001680 WD40_repeat 377 413
IPR001680 WD40_repeat 257 282
No external refs found!