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  5. Sobic.010G274100.1

Sobic.010G274100.1


Description : E3 ubiquitin ligase *(PUB15)


Gene families : OG_42_0000634 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000634_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor: Sobic.010G274100.1
Cluster HCAA Clusters: Cluster_206

Target Alias Description ECC score Gene Family Method Actions
MA_9478009g0010 No alias (at5g42340 : 478.0) Plant U-Box 15 (PUB15); FUNCTIONS... 0.03 Orthogroups_2024-Update
Sopen12g031510 No alias Armadillo/beta-catenin-like repeat 0.01 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0004842 ubiquitin-protein transferase activity IEA 16Dec
MF GO:0005515 protein binding IEA 16Dec
BP GO:0016567 protein ubiquitination IEA 16Dec
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Type GO Term Name Evidence Source
CC GO:0000123 histone acetyltransferase complex IEP Predicted GO
MF GO:0001871 pattern binding IEP Predicted GO
MF GO:0030246 carbohydrate binding IEP Predicted GO
MF GO:0030247 polysaccharide binding IEP Predicted GO
CC GO:0031248 protein acetyltransferase complex IEP Predicted GO
CC GO:0044428 nuclear part IEP Predicted GO
CC GO:0044451 nucleoplasm part IEP Predicted GO
CC GO:0070461 SAGA-type complex IEP Predicted GO
CC GO:1902493 acetyltransferase complex IEP Predicted GO
CC GO:1902494 catalytic complex IEP Predicted GO
CC GO:1990234 transferase complex IEP Predicted GO
InterPro domains Description Start Stop
IPR000225 Armadillo 478 515
IPR000225 Armadillo 395 434
IPR003613 Ubox_domain 274 344
No external refs found!