Sobic.010G275500.1


Description : component *(EH1/EH2) of TPLATE AP-2 co-adaptor complex


Gene families : OG_42_0001824 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001824_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor: Sobic.010G275500.1
Cluster HCAA Clusters: Cluster_234

Target Alias Description ECC score Gene Family Method Actions
Bradi1g29690 No alias Calcium-binding EF hand family protein 0.03 Orthogroups_2024-Update
Glyma.04G016600 No alias Calcium-binding EF hand family protein 0.03 Orthogroups_2024-Update
Glyma.06G016700 No alias Calcium-binding EF hand family protein 0.05 Orthogroups_2024-Update
Kfl00218_0010 kfl00218_0010_v1.1 (at1g21630 : 119.0) Calcium-binding EF hand family... 0.02 Orthogroups_2024-Update
Kfl00218_0020 kfl00218_0020_v1.1 (at1g21630 : 149.0) Calcium-binding EF hand family... 0.02 Orthogroups_2024-Update
LOC_Os06g51250 No alias EF hand family protein, putative, expressed 0.03 Orthogroups_2024-Update
PSME_00028035-RA No alias (at1g20760 : 553.0) Calcium-binding EF hand family... 0.02 Orthogroups_2024-Update
Pp1s149_18V6 No alias calcium ion binding 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005509 calcium ion binding IEA 16Dec
MF GO:0005515 protein binding IEA 16Dec
Type GO Term Name Evidence Source
MF GO:0004843 thiol-dependent ubiquitin-specific protease activity IEP Predicted GO
CC GO:0005667 transcription factor complex IEP Predicted GO
CC GO:0005669 transcription factor TFIID complex IEP Predicted GO
BP GO:0006325 chromatin organization IEP Predicted GO
BP GO:0006352 DNA-templated transcription, initiation IEP Predicted GO
BP GO:0006476 protein deacetylation IEP Predicted GO
BP GO:0016070 RNA metabolic process IEP Predicted GO
BP GO:0016569 covalent chromatin modification IEP Predicted GO
BP GO:0016570 histone modification IEP Predicted GO
BP GO:0016575 histone deacetylation IEP Predicted GO
MF GO:0019783 ubiquitin-like protein-specific protease activity IEP Predicted GO
BP GO:0035601 protein deacylation IEP Predicted GO
MF GO:0036459 thiol-dependent ubiquitinyl hydrolase activity IEP Predicted GO
CC GO:0044451 nucleoplasm part IEP Predicted GO
CC GO:0044798 nuclear transcription factor complex IEP Predicted GO
CC GO:0090575 RNA polymerase II transcription factor complex IEP Predicted GO
BP GO:0098732 macromolecule deacylation IEP Predicted GO
MF GO:0101005 ubiquitinyl hydrolase activity IEP Predicted GO
MF GO:1990380 Lys48-specific deubiquitinase activity IEP Predicted GO
InterPro domains Description Start Stop
IPR000261 EH_dom 392 463
IPR002048 EF_hand_dom 6 24
No external refs found!