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  5. Sobic.K042700.1

Sobic.K042700.1


Description : MADS/AGL-type transcription factor


Gene families : OG_42_0000009 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor: Sobic.K042700.1
Cluster HCAA Clusters: Cluster_2

Target Alias Description ECC score Gene Family Method Actions
A4A49_15806 No alias developmental protein sepallata 1 0.03 Orthogroups_2024-Update
At2g24840 No alias Agamous-like MADS-box protein AGL61... 0.03 Orthogroups_2024-Update
At5g62165 No alias MADS-box protein AGL42 [Source:UniProtKB/Swiss-Prot;Acc:Q9FIS1] 0.03 Orthogroups_2024-Update
Potri.009G084100 No alias AGAMOUS-like 62 0.02 Orthogroups_2024-Update
Seita.1G308200.1 No alias MADS/AGL-type transcription factor 0.05 Orthogroups_2024-Update
Seita.5G036500.1 No alias MADS/AGL-type transcription factor 0.05 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA 16Dec
MF GO:0046983 protein dimerization activity IEA 16Dec
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Type GO Term Name Evidence Source
MF GO:0008107 galactoside 2-alpha-L-fucosyltransferase activity IEP Predicted GO
MF GO:0008417 fucosyltransferase activity IEP Predicted GO
MF GO:0015276 ligand-gated ion channel activity IEP Predicted GO
MF GO:0022834 ligand-gated channel activity IEP Predicted GO
MF GO:0022836 gated channel activity IEP Predicted GO
MF GO:0022839 ion gated channel activity IEP Predicted GO
MF GO:0031127 alpha-(1,2)-fucosyltransferase activity IEP Predicted GO
BP GO:0042546 cell wall biogenesis IEP Predicted GO
BP GO:0044085 cellular component biogenesis IEP Predicted GO
InterPro domains Description Start Stop
IPR002100 TF_MADSbox 18 64
No external refs found!