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  5. Seita.1G013800.1

Seita.1G013800.1


Description : EC_3.2 glycosylase


Gene families : OG_42_0000259 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000259_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Setaria italica: Seita.1G013800.1
Cluster HCAA Clusters: Cluster_181

Target Alias Description ECC score Gene Family Method Actions
124011 No alias Pectin lyase-like superfamily protein 0.02 Orthogroups_2024-Update
Brara.G01955.1 No alias EC_3.2 glycosylase 0.02 Orthogroups_2024-Update
GRMZM2G154671 No alias Pectin lyase-like superfamily protein 0.03 Orthogroups_2024-Update
HORVU7Hr1G002110.5 No alias EC_3.2 glycosylase 0.03 Orthogroups_2024-Update
Pp1s252_60V6 No alias glycoside hydrolase family 28 expressed 0.04 Orthogroups_2024-Update
Seita.6G007100.1 No alias EC_3.2 glycosylase 0.02 Orthogroups_2024-Update
Solyc03g117750 No alias Pectin lyase-like superfamily protein (AHRD V3.3 *** AT1G19170.1) 0.03 Orthogroups_2024-Update
Solyc07g042160 No alias Pectin lyase-like superfamily protein (AHRD V3.3 *** AT3G42950.1) 0.02 Orthogroups_2024-Update
Sopen03g036660 No alias Glycosyl hydrolases family 28 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0004650 polygalacturonase activity IEA 16Dec
BP GO:0005975 carbohydrate metabolic process IEA 16Dec
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Type GO Term Name Evidence Source
BP GO:0000075 cell cycle checkpoint IEP Predicted GO
BP GO:0000077 DNA damage checkpoint IEP Predicted GO
MF GO:0003690 double-stranded DNA binding IEP Predicted GO
BP GO:0006281 DNA repair IEP Predicted GO
BP GO:0006298 mismatch repair IEP Predicted GO
BP GO:0006950 response to stress IEP Predicted GO
BP GO:0006974 cellular response to DNA damage stimulus IEP Predicted GO
MF GO:0030983 mismatched DNA binding IEP Predicted GO
BP GO:0031570 DNA integrity checkpoint IEP Predicted GO
BP GO:0033554 cellular response to stress IEP Predicted GO
BP GO:0045786 negative regulation of cell cycle IEP Predicted GO
BP GO:0048519 negative regulation of biological process IEP Predicted GO
BP GO:0048523 negative regulation of cellular process IEP Predicted GO
BP GO:0050896 response to stimulus IEP Predicted GO
BP GO:0051716 cellular response to stimulus IEP Predicted GO
BP GO:0051726 regulation of cell cycle IEP Predicted GO
BP GO:0071705 nitrogen compound transport IEP Predicted GO
InterPro domains Description Start Stop
IPR000743 Glyco_hydro_28 139 421
No external refs found!