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  5. Seita.1G038000.1

Seita.1G038000.1


Description : pectate lyase & EC_4.2 carbon-oxygen lyase


Gene families : OG_42_0000086 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000086_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Setaria italica: Seita.1G038000.1
Cluster HCAA Clusters: Cluster_109

Target Alias Description ECC score Gene Family Method Actions
A4A49_24630 No alias putative pectate lyase 3 0.03 Orthogroups_2024-Update
A4A49_35755 No alias putative pectate lyase p59 0.03 Orthogroups_2024-Update
At1g04680 No alias Pectate lyase [Source:UniProtKB/TrEMBL;Acc:A0A178W464] 0.04 Orthogroups_2024-Update
At1g30350 No alias Probable pectate lyase 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9C8G4] 0.03 Orthogroups_2024-Update
GRMZM2G323418 No alias Pectate lyase family protein 0.02 Orthogroups_2024-Update
PSME_00019558-RA No alias (at4g13710 : 625.0) Pectin lyase-like superfamily... 0.02 Orthogroups_2024-Update
PSME_00041064-RA No alias (at1g67750 : 595.0) Pectate lyase family protein;... 0.04 Orthogroups_2024-Update
Potri.008G182200 No alias Pectate lyase family protein 0.03 Orthogroups_2024-Update
Sobic.003G322800.1 No alias pectate lyase & EC_4.2 carbon-oxygen lyase 0.04 Orthogroups_2024-Update
Solyc03g071570 No alias Pectate lyase (AHRD V3.3 *** K4BHI7_SOLLC) 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0030570 pectate lyase activity IEA 16Dec
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Type GO Term Name Evidence Source
CC GO:0005634 nucleus IEP Predicted GO
BP GO:0006576 cellular biogenic amine metabolic process IEP Predicted GO
BP GO:0009308 amine metabolic process IEP Predicted GO
BP GO:0009309 amine biosynthetic process IEP Predicted GO
MF GO:0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups IEP Predicted GO
MF GO:0030410 nicotianamine synthase activity IEP Predicted GO
BP GO:0030417 nicotianamine metabolic process IEP Predicted GO
BP GO:0030418 nicotianamine biosynthetic process IEP Predicted GO
BP GO:0042401 cellular biogenic amine biosynthetic process IEP Predicted GO
CC GO:0043227 membrane-bounded organelle IEP Predicted GO
CC GO:0043231 intracellular membrane-bounded organelle IEP Predicted GO
BP GO:0044106 cellular amine metabolic process IEP Predicted GO
BP GO:0072350 tricarboxylic acid metabolic process IEP Predicted GO
BP GO:0072351 tricarboxylic acid biosynthetic process IEP Predicted GO
InterPro domains Description Start Stop
IPR007524 Pec_lyase_N 31 74
IPR002022 Pec_lyase 175 357
No external refs found!