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  5. Seita.1G039200.1

Seita.1G039200.1


Description : subfamily ABCA transporter


Gene families : OG_42_0000851 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000851_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Setaria italica: Seita.1G039200.1
Cluster HCAA Clusters: Cluster_17

Target Alias Description ECC score Gene Family Method Actions
At3g47750 No alias ABC transporter A family member 4... 0.03 Orthogroups_2024-Update
Brara.C04287.1 No alias subfamily ABCA transporter 0.05 Orthogroups_2024-Update
Brara.F01726.1 No alias subfamily ABCA transporter 0.04 Orthogroups_2024-Update
Brara.F01728.1 No alias subfamily ABCA transporter 0.03 Orthogroups_2024-Update
GRMZM2G310144 No alias ABC2 homolog 4 0.03 Orthogroups_2024-Update
GRMZM5G886326 No alias ABC2 homolog 16 0.03 Orthogroups_2024-Update
LOC_Os02g11960 No alias ABC transporter, ATP-binding protein, putative, expressed 0.03 Orthogroups_2024-Update
LOC_Os08g30780 No alias ABC transporter, ATP-binding protein, putative, expressed 0.03 Orthogroups_2024-Update
Pp1s234_98V6 No alias abc transporter cholesterol phospholipid flippase 0.03 Orthogroups_2024-Update
Sobic.004G089300.2 No alias subfamily ABCA transporter 0.03 Orthogroups_2024-Update
Sobic.010G176800.1 No alias subfamily ABCA transporter 0.03 Orthogroups_2024-Update
Sopen03g032140 No alias ABC transporter 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA 16Dec
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Type GO Term Name Evidence Source
MF GO:0000287 magnesium ion binding IEP Predicted GO
MF GO:0003700 DNA-binding transcription factor activity IEP Predicted GO
MF GO:0004568 chitinase activity IEP Predicted GO
MF GO:0004590 orotidine-5'-phosphate decarboxylase activity IEP Predicted GO
BP GO:0006022 aminoglycan metabolic process IEP Predicted GO
BP GO:0006026 aminoglycan catabolic process IEP Predicted GO
BP GO:0006030 chitin metabolic process IEP Predicted GO
BP GO:0006032 chitin catabolic process IEP Predicted GO
BP GO:0006040 amino sugar metabolic process IEP Predicted GO
BP GO:0006206 pyrimidine nucleobase metabolic process IEP Predicted GO
BP GO:0006207 'de novo' pyrimidine nucleobase biosynthetic process IEP Predicted GO
BP GO:0008037 cell recognition IEP Predicted GO
MF GO:0008061 chitin binding IEP Predicted GO
BP GO:0009112 nucleobase metabolic process IEP Predicted GO
MF GO:0010333 terpene synthase activity IEP Predicted GO
MF GO:0016829 lyase activity IEP Predicted GO
MF GO:0016831 carboxy-lyase activity IEP Predicted GO
MF GO:0016835 carbon-oxygen lyase activity IEP Predicted GO
MF GO:0016838 carbon-oxygen lyase activity, acting on phosphates IEP Predicted GO
BP GO:0016998 cell wall macromolecule catabolic process IEP Predicted GO
BP GO:0019856 pyrimidine nucleobase biosynthetic process IEP Predicted GO
BP GO:0022414 reproductive process IEP Predicted GO
CC GO:0030915 Smc5-Smc6 complex IEP Predicted GO
BP GO:0042737 drug catabolic process IEP Predicted GO
BP GO:0044036 cell wall macromolecule metabolic process IEP Predicted GO
BP GO:0046112 nucleobase biosynthetic process IEP Predicted GO
BP GO:0046348 amino sugar catabolic process IEP Predicted GO
BP GO:0048544 recognition of pollen IEP Predicted GO
BP GO:0072527 pyrimidine-containing compound metabolic process IEP Predicted GO
BP GO:0072528 pyrimidine-containing compound biosynthetic process IEP Predicted GO
CC GO:0106068 SUMO ligase complex IEP Predicted GO
MF GO:0140110 transcription regulator activity IEP Predicted GO
BP GO:1901071 glucosamine-containing compound metabolic process IEP Predicted GO
BP GO:1901072 glucosamine-containing compound catabolic process IEP Predicted GO
BP GO:1901136 carbohydrate derivative catabolic process IEP Predicted GO
InterPro domains Description Start Stop
IPR003439 ABC_transporter-like 649 792
No external refs found!