Seita.1G046200.1


Description : component *(mS81) of small mitoribosomal-subunit proteome


Gene families : OG_42_0004307 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0004307_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Setaria italica: Seita.1G046200.1
Cluster HCAA Clusters: Cluster_45

Target Alias Description ECC score Gene Family Method Actions
At3g48250 No alias Pentatricopeptide repeat-containing protein At3g48250,... 0.03 Orthogroups_2024-Update
At5g15980 No alias Pentatricopeptide repeat-containing protein At5g15980,... 0.09 Orthogroups_2024-Update
Bradi3g07350 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.07 Orthogroups_2024-Update
Brara.F02162.1 No alias component *(mS81) of small mitoribosomal-subunit proteome 0.07 Orthogroups_2024-Update
Brara.J01919.1 No alias component *(mS81) of small mitoribosomal-subunit proteome 0.05 Orthogroups_2024-Update
Glyma.18G278400 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.05 Orthogroups_2024-Update
HORVU6Hr1G032550.1 No alias component *(mS81) of small mitoribosomal-subunit proteome 0.03 Orthogroups_2024-Update
LOC_Os01g73950 No alias PPR repeat containing protein, expressed 0.03 Orthogroups_2024-Update
Potri.015G084800 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.11 Orthogroups_2024-Update
Potri.017G108100 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
Sobic.003G442800.1 No alias component *(mS81) of small mitoribosomal-subunit proteome 0.21 Orthogroups_2024-Update
Sobic.004G082700.1 No alias component *(mS81) of small mitoribosomal-subunit proteome 0.17 Orthogroups_2024-Update
Solyc02g089560 No alias Pentatricopeptide repeat (PPR) superfamily protein,... 0.08 Orthogroups_2024-Update
Solyc03g112190 No alias Pentatricopeptide repeat-containing protein, putative... 0.02 Orthogroups_2024-Update
Sopen02g034290 No alias PPR repeat 0.05 Orthogroups_2024-Update
Sopen03g031280 No alias PPR repeat family 0.05 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source
MF GO:0000774 adenyl-nucleotide exchange factor activity IEP Predicted GO
BP GO:0001522 pseudouridine synthesis IEP Predicted GO
MF GO:0003676 nucleic acid binding IEP Predicted GO
MF GO:0003723 RNA binding IEP Predicted GO
MF GO:0003743 translation initiation factor activity IEP Predicted GO
MF GO:0005488 binding IEP Predicted GO
CC GO:0005730 nucleolus IEP Predicted GO
CC GO:0005737 cytoplasm IEP Predicted GO
CC GO:0005852 eukaryotic translation initiation factor 3 complex IEP Predicted GO
BP GO:0006139 nucleobase-containing compound metabolic process IEP Predicted GO
BP GO:0006364 rRNA processing IEP Predicted GO
BP GO:0006396 RNA processing IEP Predicted GO
BP GO:0006725 cellular aromatic compound metabolic process IEP Predicted GO
BP GO:0007186 G protein-coupled receptor signaling pathway IEP Predicted GO
MF GO:0008134 transcription factor binding IEP Predicted GO
MF GO:0008135 translation factor activity, RNA binding IEP Predicted GO
MF GO:0008565 protein transporter activity IEP Predicted GO
MF GO:0009982 pseudouridine synthase activity IEP Predicted GO
BP GO:0016070 RNA metabolic process IEP Predicted GO
BP GO:0016072 rRNA metabolic process IEP Predicted GO
MF GO:0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds IEP Predicted GO
MF GO:0016811 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides IEP Predicted GO
MF GO:0019843 rRNA binding IEP Predicted GO
MF GO:0031683 G-protein beta/gamma-subunit complex binding IEP Predicted GO
MF GO:0032977 membrane insertase activity IEP Predicted GO
BP GO:0034470 ncRNA processing IEP Predicted GO
BP GO:0034660 ncRNA metabolic process IEP Predicted GO
MF GO:0042802 identical protein binding IEP Predicted GO
MF GO:0042803 protein homodimerization activity IEP Predicted GO
CC GO:0044424 intracellular part IEP Predicted GO
CC GO:0044428 nuclear part IEP Predicted GO
CC GO:0044464 cell part IEP Predicted GO
MF GO:0044877 protein-containing complex binding IEP Predicted GO
BP GO:0046483 heterocycle metabolic process IEP Predicted GO
MF GO:0051087 chaperone binding IEP Predicted GO
MF GO:0060590 ATPase regulator activity IEP Predicted GO
BP GO:0090304 nucleic acid metabolic process IEP Predicted GO
MF GO:0097159 organic cyclic compound binding IEP Predicted GO
BP GO:1901360 organic cyclic compound metabolic process IEP Predicted GO
MF GO:1901363 heterocyclic compound binding IEP Predicted GO
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 486 514
IPR002885 Pentatricopeptide_repeat 237 266
IPR002885 Pentatricopeptide_repeat 414 441
No external refs found!