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  5. Seita.1G093200.1

Seita.1G093200.1


Description : protein involved in PS-II assembly *(HCF173)


Gene families : OG_42_0005535 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0005535_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Setaria italica: Seita.1G093200.1
Cluster HCAA Clusters: Cluster_69

Target Alias Description ECC score Gene Family Method Actions
183274 No alias high chlorophyll fluorescence phenotype 173 0.02 Orthogroups_2024-Update
At1g16720 No alias high chlorophyll fluorescence phenotype 173... 0.03 Orthogroups_2024-Update
Brara.F01166.1 No alias protein involved in PS-II assembly *(HCF173) 0.03 Orthogroups_2024-Update
Cre13.g578650 No alias high chlorophyll fluorescence phenotype 173 0.02 Orthogroups_2024-Update
Glyma.07G000500 No alias high chlorophyll fluorescence phenotype 173 0.03 Orthogroups_2024-Update
LOC_Os02g04510 No alias UOS1, putative, expressed 0.04 Orthogroups_2024-Update
Potri.014G000400 No alias high chlorophyll fluorescence phenotype 173 0.04 Orthogroups_2024-Update
Pp1s326_65V6 No alias F17F16.7; expressed protein [Arabidopsis thaliana] 0.03 Orthogroups_2024-Update
Sopen08g006330 No alias NADH(P)-binding 0.03 Orthogroups_2024-Update
evm.model.tig00020830.55 No alias (at1g16720 : 103.0) Encodes HCF173, a protein with weak... 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003779 actin binding IEP Predicted GO
MF GO:0004478 methionine adenosyltransferase activity IEP Predicted GO
MF GO:0004560 alpha-L-fucosidase activity IEP Predicted GO
MF GO:0004602 glutathione peroxidase activity IEP Predicted GO
MF GO:0005215 transporter activity IEP Predicted GO
BP GO:0006556 S-adenosylmethionine biosynthetic process IEP Predicted GO
BP GO:0006631 fatty acid metabolic process IEP Predicted GO
MF GO:0015297 antiporter activity IEP Predicted GO
MF GO:0015928 fucosidase activity IEP Predicted GO
CC GO:0016020 membrane IEP Predicted GO
MF GO:0016671 oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor IEP Predicted GO
MF GO:0016717 oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water IEP Predicted GO
MF GO:0022857 transmembrane transporter activity IEP Predicted GO
MF GO:0033743 peptide-methionine (R)-S-oxide reductase activity IEP Predicted GO
MF GO:0042910 xenobiotic transmembrane transporter activity IEP Predicted GO
BP GO:0044255 cellular lipid metabolic process IEP Predicted GO
MF GO:0045300 acyl-[acyl-carrier-protein] desaturase activity IEP Predicted GO
BP GO:0046500 S-adenosylmethionine metabolic process IEP Predicted GO
MF GO:2001070 starch binding IEP Predicted GO
InterPro domains Description Start Stop
IPR013857 NADH-UbQ_OxRdtase-assoc_prot30 311 411
IPR016040 NAD(P)-bd_dom 483 548
IPR016040 NAD(P)-bd_dom 168 260
No external refs found!